Protein Info for Atu4739 in Agrobacterium fabrum C58

Annotation: flavin-containing monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 PF07992: Pyr_redox_2" amino acids 168 to 366 (199 residues), 51.6 bits, see alignment E=2.8e-17 PF13738: Pyr_redox_3" amino acids 169 to 364 (196 residues), 70.9 bits, see alignment E=3.5e-23 PF00743: FMO-like" amino acids 208 to 368 (161 residues), 65.8 bits, see alignment E=8.2e-22 PF13434: Lys_Orn_oxgnase" amino acids 261 to 363 (103 residues), 22.4 bits, see alignment E=1.9e-08

Best Hits

KEGG orthology group: K07222, putative flavoprotein involved in K+ transport (inferred from 100% identity to atu:Atu4739)

Predicted SEED Role

"Flavin-containing monooxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVQ8 at UniProt or InterPro

Protein Sequence (600 amino acids)

>Atu4739 flavin-containing monooxygenase (Agrobacterium fabrum C58)
MLDVSPATKIDTVLSKLGNALEAGDIDAAVNLFQADCYWRDLVTFTWNLKTLEGREQIHD
MLASQLAAIKPSGFVQDAKEQASEGGGVTEGWFEFETGAARGYGHIRLKDGLIWTLLTTM
SELKGHEEPKGIRRPMGAEHGHDRSRRTWKEKREAEAAELGYAEQPYVVIIGGGQGGIAL
GARLRQLGVPTIIIEKNERPGDSWRKRYKSLCLHDPVWYDHLPYIPFPENWPVFTPKDKV
GDWLEMYTRVMELNYWGSTTCKSAQYDETTGEWTVVVDRAGKEVVLRPKQLVLATGMSGK
ANVPKFPGQDVFKGEQQHSSQHPGPDAYAGKKVVVIGSNNSAHDICAALWEAGADVTMLQ
RSSTHIVKSDSLMEIGLGDLYSERAVANGMTTRKADLIFASLPYRIMHEFQVPIYDRIRE
QDAEFYAALEKAGFMLDFGDDESGLFMKYLRRGSGYYIDVGACDLVIDGSIKLKSGVDVS
HLTENAVVLKDGTELPADLVVYATGYGSMNGWAADLISRDVADKVGKCWGLGSDTTKDPG
PWEGEQRNMWKPTRQDALWFHGGNLHQSRHYSQYLSLQLKARQAGLKTPVYGLQKPHHLS