Protein Info for Atu4710 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 transmembrane" amino acids 31 to 55 (25 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 274 to 296 (23 residues), see Phobius details amino acids 326 to 348 (23 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details amino acids 385 to 409 (25 residues), see Phobius details amino acids 422 to 443 (22 residues), see Phobius details amino acids 462 to 480 (19 residues), see Phobius details amino acids 524 to 542 (19 residues), see Phobius details PF07690: MFS_1" amino acids 74 to 437 (364 residues), 108.2 bits, see alignment E=2.1e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4710)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVN4 at UniProt or InterPro

Protein Sequence (550 amino acids)

>Atu4710 MFS permease (Agrobacterium fabrum C58)
MAVADATAGEAAQAGFLDRERIIARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKA
LPATDPSCSSLTLMGALFTTECNWRVADLGWIYTLFFVLLGCSAAIWGGWLERVGPRKAG
FVSACCWCGGILVAAIGVATHQLWLMWLGAGVIGGVGLGLGYISPVSTLIKWFPDRRGMA
TGMAIMGFGGGAMIGAPLANLLMNTFKTEASIGVWQTFVVMALVYFAFMMAGAFGYRIPP
AGWRPEGWTAPAAKSAMITTRHVHLRDAHKTPQFWLIWAVLCLNVSAGIGVIGMASPMLQ
EIFAGSLIGLPGVGFADLDAGQKAQIAAIAAGFTGLLSLFNIGGRFFWASMSDKIGRKNT
YFCFFVLGIILYALAPTLATMGNKALFVLAFGIILSMYGGGFATIPAYLADIFGTQFVGA
IHGRLLTAWATAGIAGPVVVNYIREAQIAAGVAPGPALYTSTMYILAGMLAIGLIANAFV
RPLADKWFMSDAEVAALQAKTAAANAGPTGSFGIGRGGLDAKAALAWAAVGIPLLWGVWV
TVRSSLALFG