Protein Info for Atu4667 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 925 transmembrane" amino acids 573 to 593 (21 residues), see Phobius details amino acids 728 to 752 (25 residues), see Phobius details amino acids 780 to 803 (24 residues), see Phobius details amino acids 809 to 830 (22 residues), see Phobius details amino acids 838 to 857 (20 residues), see Phobius details amino acids 897 to 920 (24 residues), see Phobius details PF00005: ABC_tran" amino acids 33 to 181 (149 residues), 102.2 bits, see alignment E=9.6e-33 amino acids 298 to 442 (145 residues), 102.3 bits, see alignment E=8.9e-33 PF13304: AAA_21" amino acids 148 to 211 (64 residues), 29.5 bits, see alignment 1.9e-10 amino acids 411 to 472 (62 residues), 27.7 bits, see alignment 6.5e-10 PF12698: ABC2_membrane_3" amino acids 579 to 916 (338 residues), 130.5 bits, see alignment E=2.1e-41 PF12679: ABC2_membrane_2" amino acids 697 to 861 (165 residues), 33 bits, see alignment E=1e-11 PF01061: ABC2_membrane" amino acids 727 to 888 (162 residues), 47.9 bits, see alignment E=3e-16

Best Hits

Swiss-Prot: 67% identical to RBBA_ECOLI: Ribosome-associated ATPase (rbbA) from Escherichia coli (strain K12)

KEGG orthology group: K13926, ribosome-dependent ATPase (inferred from 100% identity to atu:Atu4667)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVJ5 at UniProt or InterPro

Protein Sequence (925 amino acids)

>Atu4667 ABC transporter permease (Agrobacterium fabrum C58)
MVTPSATNTKNDPGAPVARLTDVRLAFGSTVALADISVEIPAGRMIGLIGPDGVGKSSLL
SLISGARAIQKGNVEVLAGDMSDPRHREDTCPRIAYMPQGLGKNLYPTLSVFENIDFFGR
LFGQDGRERKARIAELLKSTGLERFADRPAMKLSGGMKQKLGLCCALIHDPDLLILDEPT
TGVDPLSRRQFWELIDSIRAGRPGMSVIVATAYMEEAAGFDWLVAMDGGKILATGSPGEL
LERTSTANLDAAFIALLPEEKRKDYHEVHIAPRRVTHDGDYAIEASHLSMRFGDFTAVDN
VSFKIPRGEIFGFLGSNGCGKSTTMKMLTGLLAASEGEAKLFGHKVDASDMAIRHRVGYM
SQAFSLYSELTVRQNLDLHARLFKLPEATIQPRIAEMAERFDLGTVMDTLPDDLPLGIRQ
RLSLAVAMIHSPDILILDEPTSGVDPVARDGFWQILADLSRNDNVTIFISTHFMNEAERC
DRISLMHAGKVLISDTPDAITKSRNAETLEEAFVAYLEDASGVKKAEPAIAPAPATEVVP
TQHATPARKRFFDVRRMFSYTRREALELQRDPIRGTLAVLGSVILMFVIGYGINLDVEDL
SFAVLDRDDSTISRDYVLDIAGSRYFIEKEPIRDYADMDRRMRDGELSLAIEIPPGFGRD
VLRGKTVEVGAWIDGAMPQRAETVRGYVQGMHQTWLARKASEIYGNAATQSSFSIETRYR
YNPDVKSLVAMVPAVIPLLLMLIPAMLAALSVVREKELGSIVNLYVTPTTRLEFLIGKQL
PYVALGMLNFLLLTAFAIFIFQVPFTGSYLAYATGALLFVIIATSIGLVMSSFMKSQIAA
IFGTALLTLIPATQYSGMIDPVSSLQGAGAFIGNIYPATYFMTISRGTFSKGLDFAGLSG
SFLPLLIAIPLLLIAGAALLRKQAS