Protein Info for Atu4662 in Agrobacterium fabrum C58

Annotation: oligopeptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 142 to 167 (26 residues), see Phobius details amino acids 195 to 213 (19 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 301 to 325 (25 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 112 (112 residues), 51.6 bits, see alignment E=1e-17 PF00528: BPD_transp_1" amino acids 123 to 330 (208 residues), 103.5 bits, see alignment E=1.2e-33

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to atu:Atu4662)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGZ0 at UniProt or InterPro

Protein Sequence (335 amino acids)

>Atu4662 oligopeptide ABC transporter permease (Agrobacterium fabrum C58)
MLRFLTIRVASAIPVLLILSVVTFAIIQAPPGDYADYIRSQLMNQGGASFEQAEAQAQAY
RIEHGLDKPLVIQYFNWIGGIITRGDFGYSFYYNKPVADVVGERLPRTIALALVCHIFAS
VLGIAFGIWAATRQYSWVDNLLSTIAFLGMTIPRFLMALILVYLMVFHFDVSEIGSFFSP
QYGGAPWSWGKFVDLVSHVWPVVAIAVFGGLAYNMRVMRGNLLDTLNAQYVETARAKGLS
EGAVIMRHAVPNAVHPLVMYQGVVLPYMLSGEIETAIIFALPTVGPAIVGSMAVGDVYVT
ATFMMVLAATLIVGNIIADMLLAMLDPRVREFGRA