Protein Info for Atu4613 in Agrobacterium fabrum C58

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 787 PF13641: Glyco_tranf_2_3" amino acids 117 to 229 (113 residues), 50.2 bits, see alignment E=6.4e-17 PF00535: Glycos_transf_2" amino acids 120 to 241 (122 residues), 96.1 bits, see alignment E=4.5e-31 PF00534: Glycos_transf_1" amino acids 577 to 744 (168 residues), 69.4 bits, see alignment E=5.5e-23 PF13692: Glyco_trans_1_4" amino acids 600 to 731 (132 residues), 65.7 bits, see alignment E=1.1e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4613)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8U502 at UniProt or InterPro

Protein Sequence (787 amino acids)

>Atu4613 glycosyltransferase (Agrobacterium fabrum C58)
MGGHRENESNQIENLFADIDFISGEVDSLQRGNWASKVSLTRLLKNLLYSRLLYRMSKLK
WFSPRRRARFFKSAEKRDPMLLVQKVDQFCMKYYRRVNQNEALAKRNAELGSNNGLRVTA
IVPNYNHAKYLPQRIESILNQTYPLIDIIILDDCSTDNSREVIEAYVDKYPGRIKSILAT
KNSGNVFRQWQNGHSQATGDILWICESDDFCEPTFVERAIRAFRDPSVMLSFGSVQYANT
SGEFVEGLDDYREQCEPGIWDRTIVRPASEWFCKGFGVKNVIPNVGGSLWRRFPISNEVW
IQASEFKIMGDWFLYSVVAGGGQIAYEPTAVSYFRIHPNNTSGKKAQSDPSYYNEYFQIM
RVLKSKWPISEETLNRFLDEAYKNFRRSRVSGVEFESIIKSDELRATSRLKPHVLIGLLG
FTFGGGEIFPIHLANALHDLGVLVSLLQVHTTDDQQRVKQLLNPAIPIYNASQVREMGVV
NFVERAGISIIHSHVANVDKLFLDSGHLPCAYFSTLHGSYEAMKISKTRISRWSKKVDRF
AYLAERNLAPFEGLNIPDSKFLKVRNAIPLDERPFPKTRTELGISKDTIVFSLAARGVEG
KGWVETVQAYLKLRERRPDISLALLLAGEGTSVEDARKIAASDPTIQFLGFISEVHGLYR
LSDVALLPSRYPGESFPLSLIQAFQVGVPCITTDVGEIRSMTTLGSKQAGIIFQPIDDTE
MFVDELSQFMERILEASLREELRQTANSLGKCFEIEQLASEYLQQYLLLIKSNHAEEHER
AIMQGSS