Protein Info for Atu4604 in Agrobacterium fabrum C58

Annotation: IS3 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 PF13276: HTH_21" amino acids 51 to 99 (49 residues), 31.8 bits, see alignment 2.8e-11 PF00665: rve" amino acids 115 to 211 (97 residues), 69.7 bits, see alignment E=4.4e-23 PF13683: rve_3" amino acids 200 to 265 (66 residues), 112 bits, see alignment E=1.8e-36 PF13333: rve_2" amino acids 218 to 268 (51 residues), 27 bits, see alignment 8.3e-10

Best Hits

Swiss-Prot: 43% identical to YI61_XANEU: Insertion element IS476 uncharacterized 39.2 kDa protein from Xanthomonas euvesicatoria

KEGG orthology group: None (inferred from 100% identity to atu:Atu4604)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGV9 at UniProt or InterPro

Protein Sequence (309 amino acids)

>Atu4604 IS3 family transposase (Agrobacterium fabrum C58)
MVGPAAKRDAVTHLKAVMGLSERRACQIISADRKMIRYRSCRPPEVELRLRLRDLANERR
RFGYRRLFILLRRDGEPSGVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARW
SLDFVHDQFACGRRFRVLNIVDDVTRECLAAIPDTSISGRRVARELTALIPRRGKPGVIV
SDNGTELTSNAILAWSKDHKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLDHA
RSAIAEWADDYNHFRPHSSLGYQTPAAYAGTIAATGSNATQYGSFAFPPVAHTAPFGVSK
TAEALIAAG