Protein Info for Atu4579 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 561 transmembrane" amino acids 21 to 49 (29 residues), see Phobius details amino acids 71 to 97 (27 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 143 to 167 (25 residues), see Phobius details amino acids 208 to 226 (19 residues), see Phobius details amino acids 258 to 277 (20 residues), see Phobius details amino acids 306 to 331 (26 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details amino acids 397 to 416 (20 residues), see Phobius details amino acids 422 to 441 (20 residues), see Phobius details amino acids 474 to 498 (25 residues), see Phobius details amino acids 504 to 523 (20 residues), see Phobius details amino acids 530 to 552 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 90 to 285 (196 residues), 79.4 bits, see alignment E=1.5e-26 amino acids 372 to 552 (181 residues), 40.9 bits, see alignment E=9.9e-15

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to atu:Atu4579)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGU5 at UniProt or InterPro

Protein Sequence (561 amino acids)

>Atu4579 ABC transporter permease (Agrobacterium fabrum C58)
MTDMAATATTGGFRLRLPGFWTSVTVFAVILLAIFLILPIFSVFFISFFDAKTGAFGFSN
YAEVFTRRFYTVALWNTLVIGVLGMLGACLLGIPLAFCTSRYRIKGRTFIATFAVLVLCA
PPFIGAYAWIMLFGANGAVTNLLSFAGISLPTIYGIPGIVMVFSLKFFPYIYLMTENALN
TINKSYEDAAENLGCTAFQRFRKITLPLVFPAVSTGAIICFVLSIADFGTPAILGKGIRT
LSTIAYAQYTSEMAGTPTMAVTISMVMIAISMAALLLQRHILAKRRYASSLTNRPVKQSM
RPLKSFIVHGFCYLVVFIAMLPSLTVIYTSFLATSGPVFTGGFGLDSYSRILRDSPQAIA
NSFMFALAAVVLIAIVSGLLSFIVVRRDNAVSGSLDLLLMVPYLIPGVVMAIGYVTTFRY
PPFDITGTALIIVLLVFIRRLPYGVRSTTSILRQIKPSIEEAAVNLGASPAKTFLSVTVP
LMLPGLIIGSLMSFITAINELSSTLILYTARTITMPVLIYIQVIDGEFGTAAALSTLLLV
STGVCVFVVFRLSEDKEASFV