Protein Info for Atu4571 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 23 to 49 (27 residues), see Phobius details amino acids 81 to 105 (25 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 186 to 214 (29 residues), see Phobius details amino acids 250 to 272 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 100 to 273 (174 residues), 57.9 bits, see alignment E=6e-20

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu4571)

Predicted SEED Role

"Putative ABC transporter of substrate X, permease subunit II" in subsystem ABC transporter of unknown substrate X

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVA5 at UniProt or InterPro

Protein Sequence (287 amino acids)

>Atu4571 ABC transporter permease (Agrobacterium fabrum C58)
MSVITIEPAITPRRRAFTPEDRIFVSIGLYGTLTLAIALPLALMFLWSIADGWSPPLVVP
KDYTTARWAGILGDASLIRAAINSIVIAIVVTFLTAAIALPTAWAMARFPFRLKRLVEIF
ILAPIIIPGLVVAVGIGQVFLLFGLAYSVTGVILVQIVGTLPLMIRLMTAALETIPDDLI
HAARSLGAGTVGIVLHIILPLAVPGLLAGGLMSFIGSFEEFDKSFIVGAPVVETLPIKLY
MYLDPYSMQLPLASIVSFILLLPALIVFIIAGRILRDDLMAAGMGKI