Protein Info for Atu4526 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 606 PF00005: ABC_tran" amino acids 26 to 185 (160 residues), 102 bits, see alignment E=1.1e-32 amino acids 332 to 483 (152 residues), 114.8 bits, see alignment E=1.2e-36 PF08352: oligo_HPY" amino acids 236 to 268 (33 residues), 36.8 bits, see alignment (E = 1e-12) amino acids 535 to 581 (47 residues), 30.4 bits, see alignment 1.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4526)

Predicted SEED Role

"Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGS8 at UniProt or InterPro

Protein Sequence (606 amino acids)

>Atu4526 ABC transporter permease (Agrobacterium fabrum C58)
MIAANANALLSVEGLSVEFGDSRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLAD
MMGATYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLV
LHEKLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIA
DEPTTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGP
VKDIFANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYD
QKPLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRT
IQQLQTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPIN
THGLINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIAD
EALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSR
QQVFETPTHDYTRRLLSAVPVADPTIERRIAMIEGEIPNPVRRVGDEPAILAHEEINPGH
FIAKSA