Protein Info for Atu4412 in Agrobacterium fabrum C58

Annotation: rhizobiocin/RTX toxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1937 PF00149: Metallophos" amino acids 307 to 535 (229 residues), 22.7 bits, see alignment E=3e-08 PF00353: HemolysinCabind" amino acids 1272 to 1305 (34 residues), 30.4 bits, see alignment (E = 7.5e-11) amino acids 1308 to 1342 (35 residues), 31.2 bits, see alignment (E = 4.1e-11) amino acids 1335 to 1366 (32 residues), 22.8 bits, see alignment (E = 1.8e-08) amino acids 1753 to 1786 (34 residues), 33.8 bits, see alignment (E = 6.7e-12) amino acids 1789 to 1823 (35 residues), 39.3 bits, see alignment (E = 1.3e-13) amino acids 1824 to 1858 (35 residues), 39.9 bits, see alignment (E = 8e-14) PF17963: Big_9" amino acids 1443 to 1528 (86 residues), 51.1 bits, see alignment (E = 4.4e-17) amino acids 1533 to 1621 (89 residues), 63.3 bits, see alignment 6.9e-21 amino acids 1626 to 1731 (106 residues), 47.6 bits, see alignment 5.6e-16 PF17803: Cadherin_4" amino acids 1445 to 1504 (60 residues), 35.6 bits, see alignment (E = 2.7e-12) amino acids 1533 to 1600 (68 residues), 44.6 bits, see alignment (E = 4.2e-15) amino acids 1627 to 1682 (56 residues), 33 bits, see alignment (E = 1.8e-11) PF17892: Cadherin_5" amino acids 1445 to 1539 (95 residues), 62.6 bits, see alignment 6.8e-21 amino acids 1542 to 1632 (91 residues), 46.7 bits, see alignment 6e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4412)

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CUW1 at UniProt or InterPro

Protein Sequence (1937 amino acids)

>Atu4412 rhizobiocin/RTX toxin (Agrobacterium fabrum C58)
MATSYSLVYDVYFPSNGSTGWMPFLQTDVTNVSDGDIFGKASGDSYGLGISSNYRGTAKL
DAWNRIGLTIDKNTDGTLSMNKYVNGEFVATQQIASSSASRFAIDLQKGFLIFSDEDGET
SPGYLSNFLFLQKSLSKDEMSLLGGPKASGIVPDSMKQAAEQIGAIETRFSNGSAAPVMG
TGTITAKGTSLQFTTPEGAGILGIGETAAVAPSTVAKIAPIKDMMVTPDAANATIDLAKY
FSGEKLTFTVQNSENKVVAATLDAGGKLTLDFAELGHSDVRVTATDDAGKSVTDDFRVRV
AGPNAYTIAVFPDTQDYTSNDGIKHLFGDMTQWLVDNRQNHSIVFMSHVGDITQNNKSSE
WDIAEAALRKLDGKLPYALLPGNHDQGTYGNAANHSSDQLDSRFSAEKQAATNAGVFGGA
YDQEKTAARNTYSTFTAPDGTKWLSISLEFGPRDDVIRWAGDVIEKFPDHRVMLATHSLT
SYATRQDNLALPLYDEGAGYDYGMRTDQRGANDGEYVARALLARYPNIVMTFSGHIFGDG
AETDITYNQYGEPVFQFLVNYQNGVSREITGNGIESRGNNGGNGAIRLITIDPDNNRITT
ETYFTAFDDYLDGYRTKPELDRDGLTGYYRGHQEVFENIYVGQGKARAMADAGDDIVASA
ASGASVANVALSAAKSLRSQDIRSFVWTDSNGDVVAEGKEAIADLSLGKHKLTLTTTDVN
GVKTSDTLDVLVRGDRTLLVDNFNDGKADGWATDFGATDGNTGNFLLKGTVFSRSTTGDG
LDAPEAALFDQSDATGNKLVYIGAQSSGWSNYVFEATLTQLDNDAIGVYFYYSDAKNYYR
FTMDGEANRRQLVKVSNGVETLLASVNEGSPYNMDIPLTVAIVDGAINVFLGDKNVFGGP
VVDVTSPLSGGTVGLYSSGQRASVFDDIVVTKAATTAKAGIDQRVYDFDGDGKVSVRLDA
SSSFSAGQLRDFVWTDLDGNVVAIGKKVDADLNVGVNKLLLMVSDAQGSVSTDRIDVTVV
DKTKILVAENFSTAEAMARFKIVDEGEFGGIGADGKSSEWLISDGKLLQTTGLMSRELTW
NGATNSDKYKRGWSPMGDGVNVLRLGTYALFNDPAAQAWTDYAIEANFQTPDKDGLGFLF
RYKDSKNYYKLELDADGILDRNPGNGAGSIFNLVRMKNGIEEILAQVPGKYEPGQEMKLR
VEVIGDKITAFLNEEALFAYPIGDRGLAAGTFGLYSWGNAGLTFDNLTVVDLKSGLEVNR
IVGTNGADVLVGTAAAETMFGLEGNDELQGFGGDDRLDGGAGDDALAGGTGNDALSGGAG
NDELWGDDGDDMIAGGLGDDFIEGGRGNDLLIGGDGSDRYRYGRGDGSDVIVETASASGS
VDRLSLYDIDRSEAVLRKYGQSVVIELADGETLTLSNQLADGGIERLSFADGVVLNRGDI
VKGLVNRGPVAADDGLAAVNEDAPSFVISFATLLGNDRDADLDGLTVTGVSAPVGGTAVL
EETGIRFTLSADFNGDAAFRYSIADGRGGVSEATASFNVKPVNDAPVFSSSANVETEEDT
AVSGRIVATDADGDTLSFALKADAVNGIARINAETGAWTYTPNENVNGTGSFTVVVSDGK
GAATESTVTVTIKAVNDAPVAVADLIAIGEKDKGVFDLVANDKDIEGDRLALVGVAVTAV
AGLSLTNEQAAAAFSLVDGKLVADPSSAFAKLEDDQQATVTLTYTVRDANGGESTGTTTV
TVDGYTEYNIVEGSDGADVLIGTSRKDMIEGGAGDDRLSAGSGNDMVDAGSGNDRVIAGE
GDDVVDGGPGNDVLMGGAGNDVLYGGDGNDEISGGSGNDTLSGGAGNDVLTGGSGADTFV
FATGSGRDVVTDFQAGADGKDVVELSKEVFADYRALIASGSFTDGEDGAQIAFKDGSTIT
FDGVKTEQFVIDDFRFA