Protein Info for Atu4353 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 66 to 83 (18 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 116 to 133 (18 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 185 to 343 (159 residues), 119.3 bits, see alignment E=6.8e-39 PF00990: GGDEF" amino acids 185 to 339 (155 residues), 137.4 bits, see alignment E=3.8e-44 PF00563: EAL" amino acids 369 to 592 (224 residues), 217.5 bits, see alignment E=1.8e-68

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4353)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CUQ4 at UniProt or InterPro

Protein Sequence (612 amino acids)

>Atu4353 hypothetical protein (Agrobacterium fabrum C58)
MMYFILLSSTWALASTHMQLAPFWLTVGVPAVFTIGCTLRVAFWWRTRGIDPRPEVALAA
LRRTNRLAAGIALAFTLWSFLLVPHGDAYTRSHVAFYMAITVISCIFCLMYVRSAAFMVT
VIVNGAFIAFFVASRQPTFIAIAINVLLVCAGMMSILLTNYRNFERMVISQQRTEALSNE
NLLLANIDSLTGLPNRRAFFAHLEVELANAREKGTRLALGVIDLDGFKPVNDLYGHSVGD
RLLINVSKRLTANLKASKAFRLGGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEG
TVHVSASMGIAVFPHLASTLEQLFDRADYALYHAKKTRRGDAVLFDAEHEKQINIEARIE
HLLKQSDLKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAGIVG
SLTRPLLKMALASASTWDPSLRLSFNLSAQDLNCHEGVLSLIGIIENSCFDTRRLDLEIT
ETAFAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRSFVTDLHE
KPASYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGATLVQGYIYAPPLREWDVAA
FLSGPRAVVGTG