Protein Info for Atu4316 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 280 to 297 (18 residues), see Phobius details amino acids 303 to 326 (24 residues), see Phobius details amino acids 338 to 358 (21 residues), see Phobius details amino acids 369 to 387 (19 residues), see Phobius details PF07690: MFS_1" amino acids 19 to 296 (278 residues), 68.1 bits, see alignment E=3.4e-23 amino acids 222 to 382 (161 residues), 54.3 bits, see alignment E=5.6e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4316)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGF2 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Atu4316 ABC transporter permease (Agrobacterium fabrum C58)
MSNPYREIFRAPGAKGFSAAGFFARLPIAMAPIGIVAMLSQTHGEYWLAGAVSATFALTN
AAAAPQISRLVDRMGQSRVLIPATIISVIAFAALITATNQRWPTWTLFLSAFLAAAMPSI
PAMMRARWTEIFRDRPELNTAFAFESAADELVYIAGASLSVGLAVSLFPEAGMMISTTFL
ALGTFAFLLQRSTEPKVRPVESGYRQRSAIFLRPVQIITLSLIFVGSTFATAEVSAVAIT
KELGQPGAASLVIGVYAIGSFVVGLTLGAINPKMPLQRQLLIAVSVLALTALPLLVANSS
VALLAFAVFLSGVAISPVFITSFGLIERRVPESMLTEGVTWVMTGIGIGMAFGAFISGWV
IDNFGPDNGFWVSVAASLTTVAIIGLGQRSLSGETRDSCSASAVQQPAE