Protein Info for Atu4305 in Agrobacterium fabrum C58

Annotation: two component sensor kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 880 PF00989: PAS" amino acids 30 to 141 (112 residues), 26.3 bits, see alignment E=2.8e-09 amino acids 306 to 368 (63 residues), 26.6 bits, see alignment 2.2e-09 amino acids 384 to 497 (114 residues), 35.7 bits, see alignment E=3.4e-12 amino acids 513 to 630 (118 residues), 22.7 bits, see alignment E=3.9e-08 TIGR00229: PAS domain S-box protein" amino acids 37 to 141 (105 residues), 38.3 bits, see alignment E=6.8e-14 amino acids 298 to 378 (81 residues), 36.1 bits, see alignment E=3.2e-13 amino acids 379 to 507 (129 residues), 56.9 bits, see alignment E=1.1e-19 amino acids 508 to 640 (133 residues), 48.9 bits, see alignment E=3.4e-17 PF08448: PAS_4" amino acids 40 to 142 (103 residues), 32.8 bits, see alignment E=3.2e-11 amino acids 391 to 498 (108 residues), 24.4 bits, see alignment E=1.3e-08 PF13426: PAS_9" amino acids 41 to 141 (101 residues), 27.1 bits, see alignment E=1.9e-09 amino acids 312 to 368 (57 residues), 23.3 bits, see alignment 2.8e-08 amino acids 396 to 498 (103 residues), 24.6 bits, see alignment E=1.2e-08 PF08447: PAS_3" amino acids 47 to 138 (92 residues), 60.5 bits, see alignment E=7e-20 amino acids 298 to 365 (68 residues), 61.3 bits, see alignment 4e-20 amino acids 406 to 493 (88 residues), 67.4 bits, see alignment E=5.1e-22 amino acids 535 to 626 (92 residues), 54.4 bits, see alignment E=5.8e-18 PF00512: HisKA" amino acids 656 to 721 (66 residues), 38.7 bits, see alignment 3.9e-13 PF02518: HATPase_c" amino acids 768 to 873 (106 residues), 73.6 bits, see alignment E=8e-24 PF14501: HATPase_c_5" amino acids 769 to 860 (92 residues), 27.8 bits, see alignment E=9e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4305)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CUK9 at UniProt or InterPro

Protein Sequence (880 amino acids)

>Atu4305 two component sensor kinase (Agrobacterium fabrum C58)
MSRSAETSGMDGAGSARPPDIDAVEAAKVVERIIGNAWAADANGNFIYVTPAALAFFGIS
LESLNSQSGESAFGWKRVIHPEDYESAAAAWRRCLRTGEHYNVEHRMLRATGVYGWARST
GQPIRDGNGVILGWYGTVIDIALASREDNRDDPSAGRTPQDILRSMDTVHPHDRAAIEQA
AARAFFHGIPQITRYRELQADGSYRQVELRLEPENGVSAEVDPAMTRQDEPWMRASSFGE
TRNAVQAALAIEKLYGDAWAIDAIGQFTYATPASQNSVARALDDLNALLDDKPFLGGGRQ
GWQRGIHPDDSDRAAETLRRCLRTGEHWNCEYRAARADGSYVWHRAAARPTRDEQGRITG
WYGTALDIDVYKRTEAALRERERQLQQLIDTVPALIWSTMADGAPAYVNRQFTEVTGATL
EDMTAPNGSPSLGVVHPEDRAAAREAFLRSVEAGIPYLQRYRQLRAGGSYRWTETRAEPL
RDDTGTIIYWYGVSSDIHDLITTQEALRESERHLQQLVETLPALIYCALPDGKPIYRSQR
LRQYLGFNLEDTDGFGKSRLDGTLDAVIHPDDLAVVKEHYAHSLATGEPYLQRHRLRRFD
GVYRWVETRASAMRNGDGEIAQWNGICLDIEDQVQAQEELSRAHENLARSSQAASLAELS
ASIAHEVNQPLSAVMNYSSACQRWLTAEPPNIERAQKTLERIVQSANSAADVVSRIRALF
RQSTDKRDSTELGAVVRQARDLLAEEAGRRRIRMTVEGESGLLLVPFDRVQIQQVLVNLL
RNGMDAMASVANERVLQVRAFRAGDMVRIEVADRGRGVQFPDRIFEPFFTTKDQGMGMGL
AICRSIIEAHEGQLWAEKNEPIGSKFVFTLPLDIAKIHDR