Protein Info for Atu4282 in Agrobacterium fabrum C58

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 transmembrane" amino acids 32 to 53 (22 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 99 to 125 (27 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 198 to 220 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 28 to 120 (93 residues), 74.2 bits, see alignment E=4.9e-25 PF00528: BPD_transp_1" amino acids 44 to 227 (184 residues), 53.4 bits, see alignment E=1.4e-18

Best Hits

KEGG orthology group: K10040, putative glutamine transport system permease protein (inferred from 100% identity to atu:Atu4282)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGD2 at UniProt or InterPro

Protein Sequence (252 amino acids)

>Atu4282 amino acid ABC transporter permease (Agrobacterium fabrum C58)
MIGDIVAILHDYWLLLLIGQYPNGPLGGLANTLILSALAIALAFPVSILMALARLSTWRV
LRLPVTALVYVTRGVPLLMLILWTYFLIPLWTGADVPSFAIMLATLVVYQGAFLSEVVRA
GIVALGVGQMDAAKALGHSYGSAMRFIILPQALYNMIPSMISTFVATIKDTTLGYVINVP
DLTFAASQVNNQLLTQPFQVFLILAVVYYALCWSLTYLANAVERRIARRRAGLVSRPHQA
SLTQAKILTEQP