Protein Info for Atu4252 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF01547: SBP_bac_1" amino acids 41 to 327 (287 residues), 115 bits, see alignment E=1.1e-36 PF13416: SBP_bac_8" amino acids 45 to 349 (305 residues), 98.8 bits, see alignment E=7.4e-32

Best Hits

KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 100% identity to atu:Atu4252)

Predicted SEED Role

"ABC transport system, sugar-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGB3 at UniProt or InterPro

Protein Sequence (419 amino acids)

>Atu4252 sugar ABC transporter substrate-binding protein (Agrobacterium fabrum C58)
MRRTIVKIAMTGFLVTSGLVSPALSQELRMAIWSANEAHLALFNEIADEFEASHPGVKIT
YDSLAYEGYATTLTTQIAGGNPPDLAWLFDTTAPDFMAAGALYPLTETFANTQGYDMGDF
PPATLAAWSYEGTQYLYPFSTSPFGVFVNNDMIRAAGAKTPAEMIAAGDWNWDNAIATAA
KVAATGKQGLIIRDFEYKAWENLAEVYTGWNAYPWSKDTKSCAFASPEMVDAMRFIHDAI
FVKKAMPGPGVSADFFAGDAAMTTTQISRAALLPKGDKAFDWDLVPLPTGPAGDYAVTGR
AGIGVLASGKNPKLAAEFLAFFSSKPNVAKLARFFPPARQSLLTADVLAAANPLLSRKQI
EAVVIRGVATGQSTQQVRNFARLQQTVRAGLDGLWRPDADVAAVLQALCGRLDPLLAAN