Protein Info for Atu4090 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 46 to 77 (32 residues), see Phobius details amino acids 141 to 164 (24 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 255 to 276 (22 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details PF00005: ABC_tran" amino acids 360 to 494 (135 residues), 77 bits, see alignment E=1.2e-25

Best Hits

KEGG orthology group: K06148, ATP-binding cassette, subfamily C, bacterial (inferred from 100% identity to atu:Atu4090)

Predicted SEED Role

"Transport ATP-binding protein CydC" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CG19 at UniProt or InterPro

Protein Sequence (563 amino acids)

>Atu4090 ABC transporter permease (Agrobacterium fabrum C58)
MIARFAILRPVIALFWSTRRGMLLAGAVLAVTTVLAGIGLLGVSGWFITATAIAGLLPAT
AFAFDVFAPSAAIRLLALARTAARYGERMTTHEATLSVLAALREKLFRGFAAPQAAKSLE
ARPARLLNRLTADIDALDSLYLRVLVPAAVAILAALVTGFGLAFLHPLAGVLAATFLIAA
GLGISARSALKAEKFSRRRAIGLEALRARTADLVSGQTELLTTGRLSAQVAAVKRADDYL
AACDDSLNRIETNAGFSFGLSAAILLSAALLGMACLVEHGAGSAPAAALGLLVCFAALEP
FTALRRGAMELGRTLFSARRIAPRLSATAEAHCPALPASGIAAELRGVRLEREGNEHPVL
TNINLAIACGERVAIVGASGAGKTSLIQLVAGELHPAAGSVRALPSTLMTQRSQLFRDSI
ADNLRLAKPAATGVELWEALEAAGLAEHVRTLPKRLETKLGEAGQGLSGGQSRRLALARF
LLADRPLWLLDEVTEGLDGETARDVLGRLFARVEGKTVLMITHNRREAEFADRIIVLREG
RQFDECQSGTLEYGVVLETLRPD