Protein Info for Atu4063 in Agrobacterium fabrum C58

Annotation: O-linked GlcNAc transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 transmembrane" amino acids 31 to 40 (10 residues), see Phobius details PF07719: TPR_2" amino acids 79 to 111 (33 residues), 26 bits, see alignment 4.3e-09 amino acids 182 to 211 (30 residues), 24.9 bits, see alignment (E = 9.7e-09) amino acids 249 to 282 (34 residues), 24.4 bits, see alignment 1.4e-08 PF13181: TPR_8" amino acids 80 to 111 (32 residues), 22 bits, see alignment 8.4e-08 amino acids 113 to 145 (33 residues), 19.2 bits, see alignment 6.9e-07 amino acids 152 to 177 (26 residues), 13 bits, see alignment (E = 6.7e-05) amino acids 182 to 212 (31 residues), 22.7 bits, see alignment 4.9e-08 amino acids 217 to 246 (30 residues), 16.3 bits, see alignment (E = 5.9e-06) amino acids 249 to 282 (34 residues), 20.3 bits, see alignment 2.9e-07 PF00515: TPR_1" amino acids 80 to 112 (33 residues), 30.5 bits, see alignment 1.5e-10 amino acids 182 to 211 (30 residues), 32.3 bits, see alignment (E = 4e-11) PF13432: TPR_16" amino acids 85 to 145 (61 residues), 29.6 bits, see alignment E=4.8e-10 amino acids 153 to 215 (63 residues), 18.1 bits, see alignment E=2e-06 amino acids 221 to 281 (61 residues), 18.1 bits, see alignment E=2e-06 PF13431: TPR_17" amino acids 102 to 134 (33 residues), 27.4 bits, see alignment 1.7e-09 PF13414: TPR_11" amino acids 154 to 192 (39 residues), 28.6 bits, see alignment 6.2e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4063)

Predicted SEED Role

"TPR domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CTZ7 at UniProt or InterPro

Protein Sequence (298 amino acids)

>Atu4063 O-linked GlcNAc transferase (Agrobacterium fabrum C58)
MIAVDACVVKNADASTRRLPLKNNRGFRASLVICTVLAGLSGCATSNQTEDVFRIDRAQG
SQENIASLTSVINANPQDPEGYNVRGSAYGRAGDSRRAIEDFNKALQLNPRFYQAYANRA
LVYRNSGQQQQALQDYNAALQINASYDVALIGRGNLYRQSGRVNEAFNDFSRAIELETTD
GRAWHNRGLIYQLRNQHAQAIEDFSKAISLSSTSPEPYNGRGLSYVALNDDENAFADFNH
AISLDDKVAESWANQALVYERRGDMAKAAKSYSHAARLDPKYKPALDGVARTRGAGAS