Protein Info for Atu4057 in Agrobacterium fabrum C58

Annotation: succinoglycan biosynthesis transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 transmembrane" amino acids 46 to 71 (26 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 207 to 228 (22 residues), see Phobius details amino acids 256 to 274 (19 residues), see Phobius details amino acids 286 to 309 (24 residues), see Phobius details amino acids 322 to 345 (24 residues), see Phobius details amino acids 356 to 378 (23 residues), see Phobius details amino acids 384 to 403 (20 residues), see Phobius details amino acids 416 to 436 (21 residues), see Phobius details amino acids 448 to 469 (22 residues), see Phobius details PF01943: Polysacc_synt" amino acids 11 to 277 (267 residues), 195.4 bits, see alignment E=1.4e-61 PF13440: Polysacc_synt_3" amino acids 34 to 323 (290 residues), 225.1 bits, see alignment E=1.2e-70

Best Hits

Swiss-Prot: 71% identical to EXOT_RHIME: Succinoglycan biosynthesis transport protein ExoT (exoT) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to atu:Atu4057)

MetaCyc: 71% identical to succinoglycan biosynthesis transport protein ExoT (Sinorhizobium meliloti 1021)
RXN-22296

Predicted SEED Role

"Succinoglycan biosynthesis transport protein exoT"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CTZ1 at UniProt or InterPro

Protein Sequence (492 amino acids)

>Atu4057 succinoglycan biosynthesis transport protein (Agrobacterium fabrum C58)
MPPAPNVKTITTNVGWSVLSKTGTFGLKFVTVPILARLLSPEEFGVVAVGLTVVQFLTMI
AGAGLTSALIVEKEEDMDTIHTVFWANLAISCTMAAVLYIFAEFFGGLLGAVESAYLLRI
MAFLIPLQLAGDVAYSLLARRMNFSKDALWSMASESIAAVVAVALALLGFGVWALIIQLF
AAALIRLVGLYAVSRYCPRFVMKPRRLVPLLGFSSGLMGSEIANFVTFQSPMVVIARHLG
LADAGAYSASNRFASIPNQVVLSAVMGVLFPAFSRMMDDPQRRRDALMFSTQVLTVLLAP
MMFGLWAVAEPAMLVIFGQNWAYAWPVLGLLALSKAILTPCSTFIPYLKGAGYGRVLFWS
ATVRAIVTTVAVWLAALYGTLIDAMVWLCIVNAVTLVAYSWAVFKASDTPFFRGLYVSSR
PMIAALIMAVAVRYLLHALSGHIPSATLQVLVGAAAGGVIYGVLILLTERALLGKILGMV
KSRRMRDTATQG