Protein Info for Atu4037 in Agrobacterium fabrum C58

Annotation: glucose dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF07995: GSDH" amino acids 72 to 397 (326 residues), 428.6 bits, see alignment E=9.3e-133

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4037)

Predicted SEED Role

"PQQ-dependent oxidoreductase, gdhB family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CTX3 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Atu4037 glucose dehydrogenase (Agrobacterium fabrum C58)
MFHNNRFLSSTILCALLAVPLAGAAHAQTAPAAETKRPNAPDQKPAFEGQTRAPQAATQP
NVEKTVVAEGLPHLWSMEFLPDGRMIVAAKEGAMHIVADGKAGPAIDGVPDVASDGQGGL
LDIALAPDFETSRKIFFSFSEPRDGGNGTSVASAKLTEEGGAAKLEDVAVIFRQMPTYDG
DKHFGSRLVFGPNNELYVTVGERSDAKPRVQAQDLSSGLGKVFRIDTEGKALEGNPFAGQ
QNALPEIWSYGHRNMQAAALDDQGRLWTVEHGPKGGDELNLPKAGLNYGWPVITYGVEYS
GRSVGDGVTAKEGMEQPVYYWDPVIGPSGMAYYDGDQIPEWKGSFIVGGLVSQGLVILHI
DGDKVATESRLPLEARIRDVKIGPDGAVYAVTEERGGGNSQILRIAKAG