Protein Info for Atu4017 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 41 to 59 (19 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 319 to 339 (21 residues), see Phobius details amino acids 345 to 368 (24 residues), see Phobius details amino acids 379 to 400 (22 residues), see Phobius details amino acids 413 to 429 (17 residues), see Phobius details PF00083: Sugar_tr" amino acids 32 to 227 (196 residues), 93.4 bits, see alignment E=2.2e-30 amino acids 240 to 439 (200 residues), 49.6 bits, see alignment E=4.5e-17 PF07690: MFS_1" amino acids 49 to 289 (241 residues), 59.1 bits, see alignment E=5.7e-20 amino acids 278 to 433 (156 residues), 43.6 bits, see alignment E=2.8e-15

Best Hits

KEGG orthology group: K03761, MFS transporter, MHS family, alpha-ketoglutarate permease (inferred from 100% identity to atu:Atu4017)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CTV4 at UniProt or InterPro

Protein Sequence (443 amino acids)

>Atu4017 MFS permease (Agrobacterium fabrum C58)
MNWSLPVNIMANGPATAPDQKTRLKSIIGGSAGNLVEWYDWYVYSAFTLYFAPVFFPSGN
QTAELLSAAAVFAVGFLMRPIGAWFMGTYADRKGRKAGLTLSVTLMCLGSLLIAVTPGHE
TIGIAAPAILVFARLLQGISVGGEYGASATYLSEMAGKSRRGFFSSFQYVTLISGQLLAL
AVLLVLQRVLTPEQLGSWGWRIPFFIGGMLAIAVFYIRRGLAETQSFENAKAGEADKPKS
SGWALFKHYPREALMVMALTSGGTLAFYAYTTYLQKFLVNTSGFSKESATEITTAALFVF
MLCQPLAGALSDRVGRKPLMVGFGILGTLFTYLIFSTLATTTDPIMAFVLVLVGLLIVTG
YTSINAVVKAEMFPAHIRALGVALPYALANTIFGGTAEFVALKFKQIGHENWFFWYVTIM
IALSLVVYVKMRDTRDHSHIHED