Protein Info for Atu4009 in Agrobacterium fabrum C58

Annotation: IS3 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 PF01527: HTH_Tnp_1" amino acids 118 to 191 (74 residues), 25.7 bits, see alignment E=3.7e-09 PF13276: HTH_21" amino acids 273 to 322 (50 residues), 54.5 bits, see alignment 3.9e-18 PF00665: rve" amino acids 346 to 444 (99 residues), 56 bits, see alignment E=1.5e-18 PF13683: rve_3" amino acids 438 to 501 (64 residues), 32.1 bits, see alignment E=2.6e-11 PF13333: rve_2" amino acids 452 to 506 (55 residues), 58.1 bits, see alignment 2.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4009)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>Atu4009 IS3 family transposase (Agrobacterium fabrum C58)
MYSYADRLRAVELYIRLGKRLNTTIRQLGYPTKNALRGWYREYVQHLDLRTQPVARAPKY
SEAQRQAALEHFRTHDRCISGTMRALGYPGRGTLTAWVREAFPEARTSMVGRSWHPGYSE
EVRQAGVIGLCSGDESAQQVADRLGVSRPTLYSWKDQLLGHEASSSMKRRKANPKVPERE
ELERKLEALQRDVRQLQLEHDLLKKANELLKKGLGVDLLILSNREKTQLIDALKEVYRLP
ELLAQLRIARSSYFYHRARMCLADKYAAVRLSLAEIFEANRRCYGYRRLQASLARKSVIV
SEKVVQRLMKQEHLAVARPRRRRFGSYLGEISPAPENLINRDFHADAPNVKWLTDITEFQ
IPAGKVYLSPIIDCFDGMVISWSIGTQPDAGLVNTMLDAAIGTVANGEERPIIHSDRGAH
YRWPGWLTRISEARLVRSMSRKGCSQDNAACEGFFGRLKTELFYPRDWKAITIEQFVAEV
DAYIRWYNEKRIKISLGSLSPVEYRQSLGLKL