Protein Info for Atu3982 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 660 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF07969: Amidohydro_3" amino acids 85 to 569 (485 residues), 439.9 bits, see alignment E=2e-135 PF01979: Amidohydro_1" amino acids 449 to 568 (120 residues), 26.3 bits, see alignment E=4.5e-10

Best Hits

KEGG orthology group: K07047, (no description) (inferred from 100% identity to atu:Atu3982)

Predicted SEED Role

"Exoenzymes regulatory protein AepA precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFW6 at UniProt or InterPro

Protein Sequence (660 amino acids)

>Atu3982 hypothetical protein (Agrobacterium fabrum C58)
MPTRRTFLGAASSLAFPNLFSPAKAADPIKSGASSMHPDTILHNGRVTTLDRGNPNATAV
AIKDGLFVEVGSDAEVMALAGSETKIIDLKGKRVLPGLIDNHTHVIRGGLNFNMELRWDG
VRSLADAMYMLKRQVAITPAPQWVRVVGGFTEHQFVEKRLPTIEEINAVAPDTPVFLLHL
YDRALLNGAALRAVGYTKDTPNPPGGEITRDANGNPTGLLLAKPNAGILYSTLAKGPKLP
LDYQVNSTRHFMRELNRLGVTGVIDAGGGFQNYPDDYEVIQKLSDENQMTVRLAYNLFTQ
KPKQEKEDFLNWTSSVKYKQGNDYFRHNGAGEMLVFSAADFEDFRQPRPDMPPEMEGELE
DVVRILAENRWPWRLHATYDETISRALDVFEKVNRDIPLEGLNWFFDHAETISDRSIDRI
AALGGGIATQHRMAYQGEYFVERYGQGVAEATPPIARMLEKGVNVSAGTDATRVASYNPW
VSLFWMVTGKTVGGMQLYPRANCLDRETALRMWTEKVTWFSNEEGKKGRIEKGQFADLVV
PDKDYFSCAEDEISFLTSELTMVGGKIVYGAGDFRVLDESNIPPAMPDWSPVRTFGGYAA
WGEPQGAGKNSLRRAAITSCGCASDCGVHGHDHAGAWTSKLPIADLKGFFGALGCSCWAV