Protein Info for Atu3968 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details amino acids 232 to 254 (23 residues), see Phobius details amino acids 261 to 280 (20 residues), see Phobius details amino acids 291 to 313 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 114 to 314 (201 residues), 68.8 bits, see alignment E=2.7e-23

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu3968)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFV9 at UniProt or InterPro

Protein Sequence (322 amino acids)

>Atu3968 sugar ABC transporter permease (Agrobacterium fabrum C58)
MYKFLAPVMGIVELPFAFLQKVLGHRRIAWVFLTPNLILFAVFAFLPIALNMAYSVTGSE
HILLSERPSVGGENFSVLLSCQNYLDPNSCQRDLFWRSVWNTLFFVVLQVGFMVGFSLIT
AVVLNRDIRARGFFRAVFFFPVLLSPVVVALIWKWILQRFGVLNAAMEGLGLGSVDWLLE
ANLAFGWSVFLSVWAHMGFYTLILLAGLQAIPRDVYEAAQLDKASPWRIFRRITLPLLAP
TMLVVLVLSLIKGVQTFDEVFAFTGGGPGSATTFIIQFIYQTGFAGTPRNFGLAAAASLL
LAVVLVVLTALQFRANRSKVDG