Protein Info for Atu3893 in Agrobacterium fabrum C58

Annotation: sugarl ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 42 to 62 (21 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 215 to 238 (24 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 119 to 297 (179 residues), 39.2 bits, see alignment E=3.1e-14

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu3893)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein GlpQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFT3 at UniProt or InterPro

Protein Sequence (304 amino acids)

>Atu3893 sugarl ABC transporter permease (Agrobacterium fabrum C58)
MSASNVTTGVERNGFGTGSAVSVRPSFAGTARSRRHHGPSRFSWLVPTIYIILLLVPIYW
LINMSFKTNAEIVSSMTLYPHQPTLQNYRTIFTDSSWYSGYINSIIYVVMNMVISVAAAL
PAAYAFSRYRFLGDKHLFFWLLTNRMAPPAVFALPFFQLYSAFGLIDTHIAVALAHCLFN
VPLAVWILEGFMSGVPKEIDETAYIDGYSFPKFFVKIFMPLIASGIGVACFFSFMFSWVE
LLIARTLTTTDAKPIAATMTRTVSAAGMDWGLLAAAGVLTLIPGALVIWFVRNYIAKGFA
LGRV