Protein Info for Atu3891 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 573 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13416: SBP_bac_8" amino acids 84 to 420 (337 residues), 33.6 bits, see alignment E=1.8e-12

Best Hits

KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 100% identity to atu:Atu3891)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFT2 at UniProt or InterPro

Protein Sequence (573 amino acids)

>Atu3891 hypothetical protein (Agrobacterium fabrum C58)
MRRHLMTTTAAMLLAMTGSAFAGMEEAKQFLDKEIGDMSSLSRAEQEKELQWFVDAAKPF
SGMEIKVVSESLTTHEYESKVLAPAFTAITGIKVTHDIIQEGDVVEKIQTQMQTGQNLYD
GWVNDSDLIGTHWRYQQVRNLTDFMANEGKDVTNPGLDLKDFIGSAFTTAPDKKLYQLPD
QQFANLYWFRYDWFNDDKNKADFKAKYGYDLGVPVNWSAYEDIAEFFTGRDVGGKKVFGH
MDYGKKDPSLGWRFTDAWLSMAGNGDKGLPNGLPVDEWGIKVNDKSQPVGSCVARGGDTN
GPASVYSIEKYLEWLKKYAPPEAQGMTFSESGPVPAQGNVAQQIFWYTAFTADMAKPGLP
VVNEDGSPKWRVAPSPHGVYWKDGMKLGYQDVGSWTLMKSTPDDRAKAAWLYAQFVTSKT
VDVKKSHVGLTFIRDTTIHHKSFTDRASKLGGLIEFYRSPARVQWSPTGTNVPDYPKLAQ
LWWQAIGDASSGAKTAQAAMDSLCAEQEKVMARIERAGVQGDIGPKLAEEHDIDYWNKDA
VSKGNLAPQLKIANEKEKPVTVNYDELVKSWQK