Protein Info for Atu3887 in Agrobacterium fabrum C58

Annotation: small heat shock protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 PF00011: HSP20" amino acids 43 to 140 (98 residues), 66 bits, see alignment E=1.4e-22

Best Hits

Swiss-Prot: 54% identical to HSPD_BRADU: Small heat shock protein HspD (hspD) from Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)

KEGG orthology group: K04080, molecular chaperone IbpA (inferred from 100% identity to atu:Atu3887)

Predicted SEED Role

"16 kDa heat shock protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFS9 at UniProt or InterPro

Protein Sequence (160 amino acids)

>Atu3887 small heat shock protein (Agrobacterium fabrum C58)
MRHVDFSPLYRSTVGFDRLFSMLDGLGQPEQAQSYPPYNIERTGENAYRITMAVAGFDET
ELSIESRANALTVKAEKATDEKTTEGEFLYRGIATRAFERRFQLADHVEVQTASLKNGLL
HIDLVRNIPEAMKPRRIAISSDSAEAPKTIEAQITPAQVN