Protein Info for Atu3873 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF12802: MarR_2" amino acids 46 to 103 (58 residues), 32.2 bits, see alignment E=2.9e-11 PF01047: MarR" amino acids 48 to 104 (57 residues), 28.4 bits, see alignment E=3.7e-10 PF13463: HTH_27" amino acids 65 to 113 (49 residues), 23.2 bits, see alignment 2e-08 PF13673: Acetyltransf_10" amino acids 196 to 305 (110 residues), 41.5 bits, see alignment E=3.9e-14 PF00583: Acetyltransf_1" amino acids 202 to 300 (99 residues), 53.1 bits, see alignment E=1.2e-17 PF13508: Acetyltransf_7" amino acids 216 to 301 (86 residues), 48 bits, see alignment E=4e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3873)

Predicted SEED Role

"Transcriptional regulator, MarR family / Acetyltransferase (GNAT)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CTI1 at UniProt or InterPro

Protein Sequence (326 amino acids)

>Atu3873 hypothetical protein (Agrobacterium fabrum C58)
MVIVARCNHNGSNLTEQFPPINDIRSNSRQLVRELGFMGGDFAGTDLPPSSVHALIEIEA
CPGITAKDLGKLLRLEKSSVSRMLRKLILSGDIVEQTDDVDSRIKRLRLTGQGREKVSGI
NGFANRQVSGALAQLTATDAHTILEGLRLYAGALGARTGTPASTVDIKQGYRPGIIARIT
QMHALYYARTSGFGQRFESVVAEGLAAFCNRLENPRNAIWVAMRGQEIIGSVAIDGEDLG
ADIAHLRWFIVDDGIRGGGVGRRLLATALAFADQAGFAETHLWTFNGLLAARHLYETHGF
TCTEEYPGSQWGSEVLEQRFIRPRPE