Protein Info for Atu3804 in Agrobacterium fabrum C58

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 96 to 119 (24 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 182 to 206 (25 residues), see Phobius details amino acids 229 to 248 (20 residues), see Phobius details amino acids 261 to 280 (20 residues), see Phobius details amino acids 291 to 310 (20 residues), see Phobius details amino acids 316 to 337 (22 residues), see Phobius details amino acids 349 to 372 (24 residues), see Phobius details amino acids 378 to 398 (21 residues), see Phobius details PF07690: MFS_1" amino acids 37 to 347 (311 residues), 119.4 bits, see alignment E=8.7e-39

Best Hits

Swiss-Prot: 37% identical to NEPI_SALPC: Purine ribonucleoside efflux pump NepI (nepI) from Salmonella paratyphi C (strain RKS4594)

KEGG orthology group: None (inferred from 100% identity to atu:Atu3804)

Predicted SEED Role

"probable transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFP2 at UniProt or InterPro

Protein Sequence (402 amino acids)

>Atu3804 permease (Agrobacterium fabrum C58)
MTDTTSQFDGAEIALEAAEEPAWTAATWFAVLSMAATSFALVSAEFLPAGLLTPMARDLG
ITEGTAGQVVTATASVGAVTALFSNVLIGKLNRKTVLVGLSALAIGSNILASFATDFWLL
LVGRAGLGIALSGFWALSVAVVARLVGANATGRGMAIVTLGVSLATIAAPSMGALISDWL
GWRVAMSMTAGLAAIAMLLQILSLPTLPASTSNSLADVFRLTRRPSVQLGMLAILLLMTG
HFAGSVYVRPFLEQVTHLDTTPIALALLGFGVASVLGNVAGGRMADNSIRLALAVTAALM
GFATLFLVFWGAHTSAAFALVALWGFAFGMAPVVLPTNLSRGAPDALEAAGSLMVVSFQV
AISIGAVFGGYIVDYYGATAPLSLTAVLAAATLALVLVQPRR