Protein Info for Atu3773 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 33 to 51 (19 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details PF01957: NfeD" amino acids 97 to 151 (55 residues), 43.8 bits, see alignment E=1.2e-15

Best Hits

Swiss-Prot: 37% identical to YBBJ_ECOLI: Inner membrane protein YbbJ (ybbJ) from Escherichia coli (strain K12)

KEGG orthology group: K07340, hypothetical protein (inferred from 100% identity to atu:Atu3773)

Predicted SEED Role

"Putative activity regulator of membrane protease YbbK" in subsystem YbbK

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFM6 at UniProt or InterPro

Protein Sequence (154 amino acids)

>Atu3773 hypothetical protein (Agrobacterium fabrum C58)
MLQRLATELGPWSWWIVGFVLLAAELIAPGVFLIWIGLAALVIGVVSLFFWEAAFWAWQL
QLVLFAALSVVFALLGRRYFGRNHATSDEPFLNQREASLVGRTATLQEPIVEGRGRIRLD
DTWWPVNGEDLPAGTRVRIASARGRTLTIEPIDR