Protein Info for Atu3747 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 transmembrane" amino acids 30 to 49 (20 residues), see Phobius details amino acids 61 to 79 (19 residues), see Phobius details amino acids 150 to 174 (25 residues), see Phobius details amino acids 203 to 226 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3747)

Predicted SEED Role

"MotA/TolQ/ExbB proton channel family protein, probably associated with flagella"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CT76 at UniProt or InterPro

Protein Sequence (340 amino acids)

>Atu3747 hypothetical protein (Agrobacterium fabrum C58)
MADSELLDLGVEKPVTTRQYSHKLSSPTPFLWTMVLFLILVGFLAAILYRQAHTAFMTNP
GLNGFILGVLVIGIILVFTQTMSLRSEVRWFNAFRAAGSVEKVGRAPKLLAPMSTLIGKR
GEVRLSGVTQRTILDSIATRLDESRDTSRYLVGLLVFLGLLGTFWGLIGTIGAISNVIQS
LDPSAGDSNDILSSLKAGLTAPLAGMGTAFSSSLLGLSGSLILGFLDLQAGRAQNRFYTQ
LENWLSSVTDTSVEGPREFSAAEPGAVVSTERSLAAMTSLAEGIQGLVKNMRSEQQMLRD
WIEAQQEESKSLRRTLDRLSARIDGDTKSPGRTRHDNGSE