Protein Info for Atu3730 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family" amino acids 1 to 261 (261 residues), 263.1 bits, see alignment E=1.3e-82 PF00149: Metallophos" amino acids 1 to 183 (183 residues), 36.5 bits, see alignment E=7.1e-13 PF13277: YmdB" amino acids 4 to 258 (255 residues), 340.7 bits, see alignment E=4.6e-106

Best Hits

Swiss-Prot: 50% identical to YMDB_BACSU: 2',3'-cyclic-nucleotide 2'-phosphodiesterase (ymdB) from Bacillus subtilis (strain 168)

KEGG orthology group: K09769, hypothetical protein (inferred from 100% identity to atu:Atu3730)

Predicted SEED Role

"FIG006542: Phosphoesterase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFK7 at UniProt or InterPro

Protein Sequence (274 amino acids)

>Atu3730 hypothetical protein (Agrobacterium fabrum C58)
MRLLFLGDMVGKTGRTAVWDRLPGLISDLKLDFVIVNGENAAGGFGITEDIFLETINAGA
DVVTTGNHVWDQKEAVSFCERHDQFLRPANYPDGTPGKGSGIFYARNGARILVANIMGRV
FMHPELDDPFKSAETILAACPLKEQADAIIFDFHAEATSEKQCFGHFVDGRASFVVGTHT
HVPTADAQILNGGTAYMSDAGMCGDYDSSLGMEKEEPINRFISKMPKGRFEAASGPATIC
GVGVEISDRTGLAEKIAPLRIGPRLSETLPSFWA