Protein Info for Atu3727 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family" amino acids 1 to 237 (237 residues), 318 bits, see alignment E=2.3e-99 PF20772: TACO1_YebC_N" amino acids 5 to 75 (71 residues), 112.8 bits, see alignment E=8.9e-37 PF01709: Transcrip_reg" amino acids 81 to 236 (156 residues), 209 bits, see alignment E=3.5e-66

Best Hits

Swiss-Prot: 100% identical to Y3727_AGRFC: Probable transcriptional regulatory protein Atu3727 (Atu3727) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: None (inferred from 100% identity to atu:Atu3727)

Predicted SEED Role

"FIG000859: hypothetical protein YebC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8U9K1 at UniProt or InterPro

Protein Sequence (248 amino acids)

>Atu3727 hypothetical protein (Agrobacterium fabrum C58)
MAGHSQFKNIMHRKGKQDSVRSKMFSKLAREITVAAKTGMPDPNMNARLRLAIQNAKAQS
MPKDNIERAIKKASGADSENYDEVRYEGYGPGGVAVVVEALTDNRNRTASNVRSIFTKAG
GALGETGSVSFSFDRVGEITYKAEVGDADKVMEAAIEAGADDVESSEDGHTIICGFEAMN
EVSKALEGVLGEAESVKAIWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSNFEVSE
EILAKLSA