Protein Info for Atu3683 in Agrobacterium fabrum C58

Annotation: peptide synthetase, siderophore biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2563 transmembrane" amino acids 267 to 284 (18 residues), see Phobius details amino acids 1317 to 1333 (17 residues), see Phobius details amino acids 1594 to 1613 (20 residues), see Phobius details PF00668: Condensation" amino acids 30 to 468 (439 residues), 343.3 bits, see alignment E=4.2e-106 amino acids 1085 to 1518 (434 residues), 315.6 bits, see alignment E=1.1e-97 amino acids 2115 to 2535 (421 residues), 205.8 bits, see alignment E=2.2e-64 PF00501: AMP-binding" amino acids 487 to 830 (344 residues), 265.3 bits, see alignment E=1.6e-82 amino acids 1541 to 1876 (336 residues), 264.1 bits, see alignment E=3.8e-82 TIGR01733: amino acid adenylation domain" amino acids 508 to 909 (402 residues), 423.7 bits, see alignment E=6.8e-131 amino acids 1560 to 1952 (393 residues), 410.4 bits, see alignment E=7.5e-127 PF13193: AMP-binding_C" amino acids 893 to 967 (75 residues), 31.3 bits, see alignment (E = 6.3e-11) PF00550: PP-binding" amino acids 995 to 1057 (63 residues), 46.4 bits, see alignment (E = 7.6e-16) amino acids 2038 to 2098 (61 residues), 51.6 bits, see alignment (E = 1.9e-17) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 2410 to 2559 (150 residues), 158.3 bits, see alignment 1.4e-50

Best Hits

Predicted SEED Role

"Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)" in subsystem Fatty Acid Biosynthesis FASII or mycolic acid synthesis (EC 2.3.1.39)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.39

Use Curated BLAST to search for 2.3.1.39

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CT27 at UniProt or InterPro

Protein Sequence (2563 amino acids)

>Atu3683 peptide synthetase, siderophore biosynthesis protein (Agrobacterium fabrum C58)
MDISRLTPEEKRQLLQRLMAGQQASEKKNFRLSHAQERIWFVEQMQPGTGAYSIPVAIRL
EGPLDRDRLRICFDIVVQRHESLRTVFEVQDGEPFQVIVSQTTADFSFHEPGDDEAARDV
AIGRFAQEPFNLSQGPLFRVGLFSVAPDEHTLVMVIHHIISDYASLQILIDEVYRLYSAA
EAPAIGQLPALDIQYRDYAEWQRNGTAALSGQIDYWREQLRDAPLLLQLPFDFARPVTQS
FQGARHKFRLGPALSSAVKDLAKSRKLTTFMVLLAAYQILLARLSRSDDICIGTTASNRN
RAQTRNLIGLFVNNLVLRTRLQPNDTFDTLLDRVRDTTLEALSNQDVPFEQVVDALNVER
DIGHNALFQSTFVLHNASGAAFDLGDIKVTPIALDSGASRFDLSLDMHEGRGNEGFSGVF
EFNTELFLPETVSRFSAYFLRLLGGLVSNPGGRIAEIDLLDKTEHAAIATANRTTIAFPL
RDFASLLEETAQVRGSSVAVRCGDRQYSHGDLNEAANRVASGLRDRIGNSKPHPRIAICL
PRSENLVIAILAVLKLGGHYVPLDPGHPAERRALILEDCKPDIILISEGEDTAYPCGCMA
IEPLLRATGSFGNPHRETLPDDLAYIIYTSGSTGRPKGVPIRQKSLVNLLTSMARRPGMS
AEDRFLAVTTPAFDIATLELLMPLMVGGLLIIAEADDIYDDMALSELIRNHSATMMQATP
ATWRLMADADWKAPAGFRMLCGGEALEPGLARRLLAAGGELWNLYGPTETTIWSTCTRIC
AEHLELPALPVGEPIANTQLHLLDDALMPVPAGVVGELYIGGEGLSPGYFNRDDLTSRAF
VEGPAAGSNGGGERSRLYRTGDLMRRSAAGHLLYVGRADFQVKLRGFRIELSEIEAILAA
QPSIEQAVVALFQDEEGSGTLVAYCRRGTSPVDEDALRAALASQLPSYMLPAAYVWMDRF
PLNANGKIDRKRLERPKQIVSSTAYTAPLEGTEQIVAAIWRELLGAEKIGRDDNFFTVGG
HSLLATRMLARLRASFAIDLPLRTFFERPRLADFAGAVDALVAMTERRPEAVSSALSKRE
HTGPTPLSHAQNRQWALAQLEPDSPLYNIPFALKIRGALDFEILSHALELTAQRQDTLRS
RFVSVDGKPFVETDPEMIFKIVPEEIGDRELEAALLDCARRPFDLAVAPLLRIHAFRTGP
QDHVLLFLLHHIIGDALSAEILLNDVATFYASLSKKEAPPNGALPLQYSDFAIWQREQDT
TNEVDYWRRTLAGAPPLLELPTDFVRPAIQGFSGESIRFSLNADLLARLRQLCDQQGATL
FMGMLTAFSTLLQRVSGMRDIVIGTPVSERFHPDLENVIGMFANTLAIRLQTQGGENFNE
ALKAARDTALSAFANQTAPFEKVVDALSLPRTWSHNPLFQAMLVSTVETRRGAISLAGME
WDRLALPDTSSRVDLTLFIHETAEELSCRLEYRSDLFRRATMESLGEALVALLEKIVERP
ELPLDRQSLVSGNHQKRLRQWNETDAEFQPQRRCLHDFVTASAETSPQAIAVTDQDRSLS
YAELDWRADRLASGLVAAGIGRGKRVGIRLERSVELVVAILAVLRTGAAYVPLDPRYPAD
RIEFIAADADLALILVTTENDISTIGQNFRCMTPGMVENLAGGAVPTPVTSGADLAYLIY
TSGSTGRPKGVAIEHRNAVAFMQWCMHAFTKDQLSGVLASTSICFDLSIFEIFATLAAGG
RIFMVDDLFAFPSAPFAGEVTLVNTVPTPMSELLKLGPLPQNVKTVCLAGEPLPRELVAR
IYANDQVECLYNLYGPSEDTTYSTVAPVPPSGEWFGIGVPIANTRAYVLDGEMNEVPVGV
PGELFLSGSGLARGYWNRPGQTAERFLPNPFADCSQHRVMYQTGDIVRRRDDGGLDYMGR
ADRQLKLNGFRIEPGEIEAVLLQQEGVHEAVAGLWRDAANHPRLAMWIAGDPALEITKLV
ATLRQRLPEHFIPVLATRLDALPRLPNGKLDRSALPDPAAYGERATETASLLNDQEDVLA
QIWQGLLGCGDIRRNDNFFSLGGDSILAIQLVSQARQKGLKMTPRDVFLHPTLASLAEVT
HVESTVTVGTGHADDEATLGAIQHWLLDQDLPDLAHWNQGLILKLTRSLDPDRLEKAISR
LLEEHQSLRARFLRKNGQWQQKFAPLSAMPPMQQLAATDENDVTDFARKLHAGFDLGAGP
LFGAILATLPDGSGRLILAAHHLIVDGVSWRMIVADIERHYLEASTIRSGAVAAGSWNSR
LSRSALFDGEEEYWRGVCEEDVRALPLDNESGSNTQSDAVTYRQTIDAETTRQLLRDVPE
CFSIASNEVLVAALYLTLRQWSGQPRLRLEMESHGRLNLFEDIDVSETVGWLTALYPVLF
DTPDDATPDRLLLDVKDTLRRIPNNGVGFGVLKYLRNKAEHLDYGKPQLRFNYLGQMDAM
FAIDSLFAPSGITSGPMYGAANPRDTILEINAMVVRGELQLQWVYGAQLHSEDTIRTLAD
HFRDNLETLIQHCLTGSGAGFSPSDFPLMDLGQDELDNLLKSF