Protein Info for Atu3673 in Agrobacterium fabrum C58

Annotation: siderophore biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 transmembrane" amino acids 84 to 106 (23 residues), see Phobius details PF00501: AMP-binding" amino acids 27 to 436 (410 residues), 221.3 bits, see alignment E=1.8e-69 PF00550: PP-binding" amino acids 633 to 700 (68 residues), 50.2 bits, see alignment E=2.5e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3673)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CT18 at UniProt or InterPro

Protein Sequence (750 amino acids)

>Atu3673 siderophore biosynthesis protein (Agrobacterium fabrum C58)
MQIIPMFARKPSGERDFITIIHRLEDVAAERPADEAFRFYPDDPGAIGESRSDGWTWGEL
NARVKIVSNEVSKTGLVGQGGRVLIVYPPGLAFIAAFLGCLHAGAVPVPVPAPRRNEGIH
RWLHIAKDAGISGIVCAEELKELLEPLQRAVGHGFCLAPSGADPNIPLRDLAPSSSAPAV
LDGNRIAFLQYTSGSTSDPKGVMVTHANLMANLRQISLAFHYGPEDRSATWLPHYHDMGL
IDGILSPIFNGFPVSIMAPASFLRRPLRFLELATQNRATIIGGPNFAYEHCADRYSAEGA
AQLDLSAVRIAYNGAEPVRPHTLRRFSALFADHGFRHDAFYCCYGQAEATLFLTGNAPSD
PPQLRCFERETLAKQGTALPLPAGADEHDAIELAACGRPGADIEIVVMEPEENRLLDDGQ
VGELWIRGPNITPGYWARAKASAESFDQKIAGEGGWRRTGDLGFRHEGQYFITGRLKDLI
IIRGQNHHPEDIEQTAFSSHSALAQGRAGAFALDVDGEEQVGLVCELTRDGLRNLDAEAV
LQAIRGSISRVHKLKLATIVLIRPSSLPRTPSGKVRRFACRQDLLNGNLKVVERWEAAPQ
ANFTPVAEPGAVADWAQQLAQVDRSRYPALLRQWIREEVSWLSRLPAGTLPAANAGFFDL
GLDSVALVGLAGTLERELGVRTQPTLFFEHSTIDALVEHLCGNLLTADVTAQLDETPIQN
SRPDEPQEETDLSSELAALSSLLQAGTGRK