Protein Info for Atu3670 in Agrobacterium fabrum C58

Annotation: siderophore biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1128 transmembrane" amino acids 284 to 306 (23 residues), see Phobius details amino acids 570 to 593 (24 residues), see Phobius details PF00668: Condensation" amino acids 53 to 500 (448 residues), 299.1 bits, see alignment E=1.1e-92 PF00501: AMP-binding" amino acids 522 to 859 (338 residues), 257.4 bits, see alignment E=4e-80 TIGR01733: amino acid adenylation domain" amino acids 540 to 936 (397 residues), 413 bits, see alignment E=6.1e-128 PF13193: AMP-binding_C" amino acids 920 to 997 (78 residues), 26.6 bits, see alignment 1.9e-09 PF00550: PP-binding" amino acids 1025 to 1089 (65 residues), 57.1 bits, see alignment 3.5e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3670)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CT15 at UniProt or InterPro

Protein Sequence (1128 amino acids)

>Atu3670 siderophore biosynthesis protein (Agrobacterium fabrum C58)
MMSNAETIALLRNRIANLDPEQRARLRSQIEARGMSWHDVAPEGDDGADGAGRLPLTSSQ
MHFWLQQKIFPESSAYIIPFRWHIDGALDHDAILRTLRIIVARHEPLRTAFPLEEGRPWQ
QVHGDMEPELVVSDCRSMSAADCDETIGRIARTAFDLSKAPLMRTHLLQLGQNEHVLVFV
FHHTVADGWSRGILMREFSLCYAAIANGQEPVLDPLPRSYGGFVRARQKWSGTKDYERQK
QYWVNRLQNLEPQEFPADYPRHETTDMACETLVKEISQELMAQVSALAAKLGTTTFVVFA
AVFQLLHHRYTGRRDLAVCVPVAGRGDPDMAGLIGLFTNTIVLRNDLSPAMSFRDWARRI
QEDFANALEHQDYPFAELMDVLGSNREGVENSPFQISFQVQTQGYRQQNAQGFDLGNASL
RVRQEAIPVAEAKLDMSWMIMERASGALVTVEYRSGRFEAVRMERQLEHFENLLRSVVAS
PDALLPTFDYISAGEREALLSSGALVARPLPVKGVHDLISSAARLHPEKIAIERVDRSWT
YSQLEEASNNLARALLTLERPVKPGMRVAVSLPGQASGIISFLAIIKAGGVYVPIDPRHP
ADRIGYVLEDAATVLVLTDDAGLFPGITCIDPVHYLENQPDAVLPAMPDNSDIYILYTSG
STGRPKGVPITHRGLLNQFQSMARQPGIRAGDRMLSVTTPAFDISVLEMLWPLSVGATAV
IREPDLLLQPEKLGRTLDEHDISHFQATPATWRMLLDSGWQGKKSLTGLCGGEALDAQLA
GRLIDRIGSLWNVYGPTETTIWAGALLVEEAHSRSGKVPIGGRLDNTSFLVLDAYMDPVP
EGVPGELHIGGISLSRGYWERPALAAEKFVPDPYDRTSTPGSRLYKTGDLVVRRPDGNLE
FVGRTDFQIKLRGYRIEVGEIESLLQEENGVDQVLVLLDANKQQLLAYVLLEDRSGKVDK
GATGIRLSRALSARLPRYMVPSHFILLEEFPMNANGKVDRKRLPLPDRSERAASEITSPA
NNVEQTLHALWQKMLKRADIGVNDNFFELGGDSLLIVAMPARVRDALGIELEVTDFFRFP
TLETLAGHIIDLQHGKTAAPESARGRGDTRGKGRERQLQRRIRSGNFA