Protein Info for Atu3577 in Agrobacterium fabrum C58

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 PF00480: ROK" amino acids 128 to 303 (176 residues), 53.7 bits, see alignment E=1.2e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3577)

Predicted SEED Role

"Xylose-responsive transcription regulator, ROK family" in subsystem Xylose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CSU0 at UniProt or InterPro

Protein Sequence (414 amino acids)

>Atu3577 transcriptional regulator (Agrobacterium fabrum C58)
MPQPMSAIASTELVRQKNSLSVMAALRLYGSLSHTDMSSFTGLASATVSVITTDLERTGL
ILRKEQIAAAGRGRPRILFAPNGAFCHVAIIIISSDSVQYSLVDYAGKLVDRFTEQRITA
EKGSFGGSILSGLARLADRSRIDRHDILQVSISSKGLVDAAAAVLVWSPVLGTEKIDFQQ
LISQGGRIRVTLNNETLLAAKAIWMREQAKDGPKPEALVTLSLGHSIGLGIARSGAGTIE
VSAPNFGHMLHLADGALCRCGTRGCIEAYSGFYAILRSAFEAPPQAEPAKFVPVAEVDKI
AASARAGARMARFAFRTAGLALGNGLSRLFSLHGHMPVFITGPGTRYFDLLESGLRDGLA
QSQAVRFGGMPKITIAANEPELVFEGHMEHALSAADDYILSAEGAQKPVRNSGA