Protein Info for Atu3557 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 35 to 53 (19 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details amino acids 423 to 441 (19 residues), see Phobius details amino acids 447 to 469 (23 residues), see Phobius details PF04932: Wzy_C" amino acids 249 to 393 (145 residues), 44.1 bits, see alignment E=9.3e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3557)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFD8 at UniProt or InterPro

Protein Sequence (489 amino acids)

>Atu3557 hypothetical protein (Agrobacterium fabrum C58)
MAFQNYARSVAIVSFWAIFLLALLNQGATDIESRIVVTAAIYLLLVPAILMFGPPKAGAG
KVLLAACFLLGALIVQMLLQTSSMPAMARPNPAWSTAAMFTQIAPAATISLTPADDWLGL
MSAALPFGAFMTGLVIFNTDERAAQTLRWFAIAGGWLALFSIVQFALFPDALGFIQKRFY
LGSLTGLFVNRNTAATFFGLILLTLATLLHKSLLAPDWAMVKALVANRLTVPADQKKLIR
KSVFIGVLAGFSFIALMLTGSRAGIASSLAALIFLILLTVFNSAPKTGRNGASSRRKQRG
SRRRAALVIAVAIALFALFANRVAIRMETRLEDDMRFCYMPGIARAITDNWPLGSGLSSF
AEIYAPYHAARCGVDAVVTHAHNVYAEGLLTLGAAFPFYVAFFVLVQLTIFIRGTRKRRN
YRYASHLGLAALLLVLLHSILDFSLQIPGFAMAYAVFLAPVITLCLNPPGVERDARKRQR
QSSAVVISE