Protein Info for Atu3556 in Agrobacterium fabrum C58

Annotation: exopolysaccharide polymerization/transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 749 transmembrane" amino acids 29 to 53 (25 residues), see Phobius details amino acids 445 to 464 (20 residues), see Phobius details TIGR01005: exopolysaccharide transport protein family" amino acids 13 to 747 (735 residues), 483.4 bits, see alignment E=1.2e-148 PF02706: Wzz" amino acids 13 to 103 (91 residues), 32.6 bits, see alignment E=2.5e-11 PF13807: GNVR" amino acids 387 to 466 (80 residues), 46.7 bits, see alignment E=7.4e-16 TIGR01007: capsular exopolysaccharide family" amino acids 548 to 734 (187 residues), 124.7 bits, see alignment E=3.5e-40 PF10609: ParA" amino acids 550 to 720 (171 residues), 36 bits, see alignment E=1.5e-12 PF09140: MipZ" amino acids 560 to 669 (110 residues), 22.2 bits, see alignment E=2.4e-08 PF01656: CbiA" amino acids 560 to 729 (170 residues), 35.9 bits, see alignment E=2e-12 PF13614: AAA_31" amino acids 561 to 678 (118 residues), 44.2 bits, see alignment E=6.6e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3556)

Predicted SEED Role

"FIG00985629: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFD7 at UniProt or InterPro

Protein Sequence (749 amino acids)

>Atu3556 exopolysaccharide polymerization/transport protein (Agrobacterium fabrum C58)
MSDYDKSGLTAEFIDIDAALAIIRRQWRVVLAAIAVAGAIGLAFAATAVPIYSATATLLI
DRNNSQIVEQLSTIGGVVEDEASILSQVEVLQSETIGLAVVDSLKLTENQEFRATRASLL
SSIFGTIRSLVNVSQWFSPTKKEAVIDDGTLKRSLSDRLLNDLSVKRIGRTYALELTYNS
TSPVLAAQIVNAVASAYLLDKLNSKYEATRRASDWLSDRIAELRQRALDTDLAVQKFRAE
HNLITTGNNGLLSDQQLAESNSALILAQSETAKARARVQRIEHILATDDVDAVVTDILDS
SVANDLRKKYLESSKLETEITRRLGSSHIQAVRLRNEMQEYRRLMFQEISRIAQSYKSDL
EVSEAKEKSLAESVAKATDISNSASETQVQMRELQREAETYKNMYQTFLQRYQEAMQQQS
FPVTEARVISKAMPPYMPSKPNKPMILVLFMVMGAAAGGGIAIFREFRDRFFRTGDQVRD
VLGLEFLGNTPLIPNQPTTEAQENGHPGLTRPTSVARYAVDHPLSSFAETLRSTRLAIDL
GIPAKTGARIVGVVSSLPSEGKSTISINLAQLLAGQGARVLLLDADIRNPGATRAMARHA
AEGLLEVLLEGRSVQDVLLRDEKTYLAFLPTVVKQRVPHSSELLTSAQMHKLLAEASSAF
DYIIVDLPPLGPVVDARAMAGRIDGFIFVTEWGKTARRAVRNTVENEVHIRKKCLGVILN
KVDTEKLKLYRAYGSSEYYHSRYTRYYHD