Protein Info for Atu3548 in Agrobacterium fabrum C58

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF13692: Glyco_trans_1_4" amino acids 239 to 370 (132 residues), 61.7 bits, see alignment E=1.4e-20 PF00534: Glycos_transf_1" amino acids 263 to 384 (122 residues), 32.6 bits, see alignment E=8.7e-12 PF13524: Glyco_trans_1_2" amino acids 268 to 385 (118 residues), 29.7 bits, see alignment E=8.8e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3548)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CSR3 at UniProt or InterPro

Protein Sequence (408 amino acids)

>Atu3548 glycosyltransferase (Agrobacterium fabrum C58)
MKIAFVSAIPAVPASEGNRSRILQLTRAVRSLGHEVHFVYIDTPMVFDFDSAAHEAEFGP
QYVHFVSRQRGGLKSRLDQDMSLEFGFTAFRAVRKVHRLLGRDSGFYNYLDEFYYPEIGR
QVRDIQRRLGIDAVIVEYAFHSRAFLGLPDEVLRILDTHDSFADRHKAFINTANKYGYWF
SVPPKMECKAFRRADVVIAIQEEEERAFRQRLGKEPPAVATVSHILDLDGRVEDLSSSDF
LFLGSSNDANIISLTGFLDNVLPIVRATRPDIRLVVAGSICGKIGDREGVVKLGRVDHLK
DAFTRAPLSINPITLGTGINIKLLDALAAGVPTISTRTGARGLSDRYQRGVVIVGDDDHQ
AFADAILQLAASRDQRQELGNKAFEDAIEWNRRQMAVLDDILTGGKPG