Protein Info for Atu3412 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 PF00005: ABC_tran" amino acids 26 to 184 (159 residues), 88.5 bits, see alignment E=3.9e-28 amino acids 302 to 453 (152 residues), 103.6 bits, see alignment E=8.5e-33 PF08352: oligo_HPY" amino acids 236 to 261 (26 residues), 20.9 bits, see alignment (E = 2.3e-07) amino acids 510 to 539 (30 residues), 22.8 bits, see alignment (E = 5.8e-08)

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to atu:Atu3412)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CF63 at UniProt or InterPro

Protein Sequence (551 amino acids)

>Atu3412 ABC transporter permease (Agrobacterium fabrum C58)
MTNLVEIRGLKVEATTDSGRRIQIIRGVDIDIAEGEIVALIGESGSGKTTIALTLMGYAR
PGCRISGGSVTVAGRDMVQLSEMERAKIRGTKISYVPQSAAAAFNPAQKIIDQVIEVTRI
HDLMPPQEARRRAVELFKALSLPNPETIGERYPHQVSGGQLQRLSAAMALIGNPELVIFD
EPTTALDVTTQIEVLRAFKSAMRKGGIGGVYVSHDLAVVAQIADRIVVLKGGEIQETGTT
TDILENAQHPYTRELLTAFNDKVRTVAPLKQNGAKPLLDIEKLIAGYGTKGDDHMPLVRA
VDSVSLAVYPGRNLGIIGESGCGKSTLARAIAGILPAASGHVIFEGRQLDADARRRTSDQ
LRRMQIVFQYADTALNPAKSIEDILGRPLAFYHSLKGKARDARIDQLLDMVKLPRSVRHR
HPSGLSGGQKQRVNFARALAAEPSLIICDEITSALDTVVAAAIIDLLGELQRELNLSYIF
ISHDLSVVESICDEIVVMYGGQKVEHLETDAIKSPTHPYSKLLFSSVPKLDPTWLDNLQQ
DAELVRAFSKR