Protein Info for Atu3382 in Agrobacterium fabrum C58

Annotation: HlyD family secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details TIGR01843: type I secretion membrane fusion protein, HlyD family" amino acids 19 to 437 (419 residues), 375.8 bits, see alignment E=1.4e-116 PF00529: CusB_dom_1" amino acids 33 to 389 (357 residues), 37.6 bits, see alignment E=4.4e-13 PF13533: Biotin_lipoyl_2" amino acids 59 to 98 (40 residues), 23.7 bits, see alignment 8.2e-09 PF16576: HlyD_D23" amino acids 277 to 377 (101 residues), 34.5 bits, see alignment E=3.3e-12 PF13437: HlyD_3" amino acids 289 to 390 (102 residues), 57.2 bits, see alignment E=6.5e-19

Best Hits

KEGG orthology group: K02022, (no description) (inferred from 100% identity to atu:Atu3382)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CSB6 at UniProt or InterPro

Protein Sequence (437 amino acids)

>Atu3382 HlyD family secretion protein (Agrobacterium fabrum C58)
MPNIDQRTQVSRSIRKHLLAGLAAGAALLAGVGGWAATTNLAGAVVASGHLVVDSYTKKV
QHPKGGVVGEILVNEGERVKAGDVVMRLDATQTRANLAIVTKRLDELGARMARLEAERDD
LAELIFPQALIARRDDPDVASAMRSETKLFEFRKSYREGRKAQLAERITQFEHEIEGLKA
QEVAYDNGLAVLEAEITSQKSLREQGVVSVQRLNSLQTQAATFGGERGEKIAYQAQTAGR
ITETKLQILQIDQELRTEVGRELREIQAQMGEFVERKVAAEDELKRIDIVAPQSGMVHEM
AVHTVGGVVTPADPIMLIVPDGDELALEVQIVPKDIDQLQVGQKAMLRMTAFNQRVTPEL
EGHVSRIAADITTDQRTGLSYYLARISVPVSEREKLNNAPLVPGMPAEAFIQTSERTALS
YIAKPLTDQISRAFREE