Protein Info for Atu3378 in Agrobacterium fabrum C58

Annotation: oligopeptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 272 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 71 to 94 (24 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details amino acids 184 to 202 (19 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 86 to 269 (184 residues), 101.9 bits, see alignment E=1.9e-33

Best Hits

Swiss-Prot: 42% identical to Y1093_BRUSU: Putative peptide transport system permease protein BRA1093/BS1330_II1085 (BRA1093) from Brucella suis biovar 1 (strain 1330)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to atu:Atu3378)

MetaCyc: 44% identical to dipeptide ABC transporter membrane subunit DppC (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CF39 at UniProt or InterPro

Protein Sequence (272 amino acids)

>Atu3378 oligopeptide ABC transporter permease (Agrobacterium fabrum C58)
MKKFTLNGLIGGILIALLLITAITGLFWTPYDPMKLGFASRLAAPGAGHLLGTDEFGRDV
LSRLMVGARASVWIGFLTVSFATICGTLIGLVSGYARGWVDGVIMAINNALLAFPGILLA
LGLLAVFGANQYGIIFALGIAYTPSMARVVRGAVLSLREREFIEASLVMGNGEIYTMFRH
ILPNCIAPITVLATSMFGWAILSESALSFLGLGVPPPAPTWGNMLAAGRPFIQQAVWLGL
FPGLCIALTLLGINLLGDALRDRLDPRMRGLK