Protein Info for Atu3318 in Agrobacterium fabrum C58

Annotation: LuxR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF00196: GerE" amino acids 187 to 240 (54 residues), 76 bits, see alignment E=7e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3318)

Predicted SEED Role

"Transcriptional regulator, LuxR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CF02 at UniProt or InterPro

Protein Sequence (256 amino acids)

>Atu3318 LuxR family transcriptional regulator (Agrobacterium fabrum C58)
MFMGTSDYAAKQKNAVAPINGTLLIIADPDLFSECLMEALGKKFPTFAVVSIKSSAEIDD
DYGNSVRLVLPYRMSGERLHTVLSEVREKHPDAPIALVVETIDKFEEPLKRLVGMRIIDG
VLPLNLRLDVFMAAVDLLMKGGEHFPAALLGKLTPYSPSVSGKSVQNNAVIANRADALAA
SRSEVAALTTREVQILDLLCKGTQNKIIADRLHLSENTVKVHVRNIYKKMNVRNRTEAAS
RFFHKDEDATFSGWTN