Protein Info for Atu3276 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1341 transmembrane" amino acids 42 to 62 (21 residues), see Phobius details TIGR04393: T5SS/PEP-CTERM-associated repeat" amino acids 245 to 292 (48 residues), 45.2 bits, see alignment (E = 1.1e-15) amino acids 347 to 399 (53 residues), 23.4 bits, see alignment (E = 7e-09) amino acids 403 to 449 (47 residues), 37.8 bits, see alignment (E = 2.2e-13) amino acids 453 to 500 (48 residues), 46.1 bits, see alignment (E = 5.8e-16) amino acids 502 to 551 (50 residues), 35.7 bits, see alignment (E = 1e-12) amino acids 556 to 608 (53 residues), 24 bits, see alignment (E = 4.6e-09) amino acids 613 to 658 (46 residues), 34 bits, see alignment (E = 3.5e-12) PF12951: PATR" amino acids 730 to 752 (23 residues), 30.6 bits, see alignment (E = 2.8e-11) amino acids 789 to 817 (29 residues), 33.8 bits, see alignment (E = 2.8e-12) TIGR02601: autotransporter-associated beta strand repeat" amino acids 730 to 752 (23 residues), 25.9 bits, see alignment (E = 1e-09) amino acids 787 to 818 (32 residues), 37.9 bits, see alignment (E = 1.7e-13) TIGR01414: outer membrane autotransporter barrel domain" amino acids 852 to 1340 (489 residues), 130.3 bits, see alignment E=1.5e-41 PF03797: Autotransporter" amino acids 1072 to 1321 (250 residues), 191.4 bits, see alignment E=2.5e-60

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3276)

Predicted SEED Role

"Outer membrane autotransporter barrel"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CS23 at UniProt or InterPro

Protein Sequence (1341 amino acids)

>Atu3276 hypothetical protein (Agrobacterium fabrum C58)
MIRGIARRPRCAVEGDWMSAGFCHVSEGKACPTAEMRGVALGRFLICGATGLSFLTLSLA
AVSDAVAETLLWTGPDGAEWFTDAAWGPSHRVPNAGDDAMINTYGPVITIGTNAEVHQLS
IGNAPGDGTLVVQGGLQTNSVILGATGGSSGTASFIGANWANDGDVSVGGNGTGSLLLLH
GTTASSENIYVGESGTGSGSLKLDNSSTLTVADTVFAGYNSWSSSAAGGSGNVEVLGASS
LYSANGVLANDPDTVGTALVSGGGSSWNMSSDLVVGEAGVGTLTITGGGMVISQTTTVIA
DLNSADGSSVTVSRLGSSLQSDSLVVGNGGAAKLVVEAAATVTSGEAIIGRHSASEATVT
GDGSKWTTGDLQVGGDTSDPGGLAGNGTLNVTAGGSVDSTVAHLGVVAGATGSAIVDGKG
SVWTVDRNSLEVGVSGAGSLAVTGGGLVDAANIIIGTNTGGNGSVRVSGADSTVKSRSDL
NVGLYGNGSMTVEAGGAVKSRDGYVATYGGSTSAVTVTGDGSSWAMTGTFFVGYASGATG
NVTVSNGGAIRATGVTLGDLAGASGTMTITGAGSKVTAYVDNGTVNSGSVDVGFQGSGSL
SVVNGGSLDAYNLYVGNALGSSGAVLVSGVGSHVSVDGLMVVGNAGNGSVEITGGASLAA
PTILIATEAGSTGVLSIGAGSGQTARSAGAVEARAIAFGAGNGSIVFNHSETGYTLSADI
SGAGRVVAEAGVTTLSGNNSYSGGTTISAGMLKGTAKSFGSGGIVNNAELVVDGGGTLSN
AISGTGSFEKTGDGNLLLTGNSTYSGATAVSAGKLSVNGSLASAVSVGSGATVGGTGTIG
GLTVNSGGTLAPGNSIGTLTSTGNATFASGSTYAVEIDADGSSDRLAVTGTITIANDVSL
IVTPLGAHSAYSLGTRYTILTATGGVTGTFSSVDESFAYLTAKVAQSGDDATTYLSFLRT
SPDSGLLAAATSTANARAAANAVEALGQTSPLYEAALFLQQGETQGAFSQLAGEIHPSLA
MALINRSGQSRDVILNRLRSAFEGVDARPILPVAYAEGGQNPFAVDDGALSFWSSGFRSR
GRIDSDGNGSSVDMNGGGILFGLDGELSDSWRAGVAAGYGHDGIKQTALAASADVDSYYL
AAYAGTQIGPASLRLGAIHAFQDAETRRSISFSTLQESLSASYGGSTSQVFAEAAWRFDF
DLTHIEPYANIAYVNTRTDGFQEKGAIAAVSSGSTRYDQLYTTFGARISRDIALEGMLGR
AMFDLAWRHNYGDTAMGSSLFYEGGGVFSVASTSSPRDAAILNLGLSYDLTPSATLTFRY
GAVFGAGVLDQSAAAELGVRF