Protein Info for Atu3236 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 121.8 bits, see alignment E=5.1e-39 PF17912: OB_MalK" amino acids 235 to 286 (52 residues), 49 bits, see alignment 1.4e-16 PF08402: TOBE_2" amino acids 279 to 349 (71 residues), 28.2 bits, see alignment E=2.6e-10

Best Hits

Swiss-Prot: 57% identical to UGPC_CHRVO: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 100% identity to atu:Atu3236)

MetaCyc: 61% identical to sn-glycerol 3-phosphate ABC transporter ATP binding subunit (Escherichia coli K-12 substr. MG1655)
ABC-34-RXN [EC: 7.6.2.10]; 7.6.2.10 [EC: 7.6.2.10]

Predicted SEED Role

"ABC transporter ATP-binding protein"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEW5 at UniProt or InterPro

Protein Sequence (357 amino acids)

>Atu3236 sugar ABC transporter ATPase (Agrobacterium fabrum C58)
MASVELRDIRKSYAALDVIHGISLDIADGEFIALVGPSGCGKSTLLRMIAGLEEITDGDI
LIGDKVVNSMTPRERNIAMVFQSYALYPHMTVAENMGFNLKLAGQPKNVIEERVAEAARM
LDLGKLLDRKPSQLSGGQRQRVAMGRAVVRNPAVFLFDEPLSNLDAKLRVQMRSEIKALH
QKVGTTSIYVTHDQIEAMTLADRVVVLNHGRIEQQGTPLELYKTPANLFVAAFIGSPAMN
LIEGVVDGEGDQPAARLKDGTAIRIAASRKVKRGQPVTIGLRPEHIGSSIGGDIALSGRT
VLVEPTGAQTHVVFELAGDQVTAVVDGEQPVKVNTPFAATVHHERVHVFDRASGLAL