Protein Info for Atu3212 in Agrobacterium fabrum C58

Annotation: oligopeptide ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 PF00496: SBP_bac_5" amino acids 111 to 458 (348 residues), 293.4 bits, see alignment E=1.4e-91

Best Hits

KEGG orthology group: K02035, peptide/nickel transport system substrate-binding protein (inferred from 100% identity to atu:Atu3212)

Predicted SEED Role

"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) or Sex pheromones in Enterococcus faecalis and other Firmicutes (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CRW6 at UniProt or InterPro

Protein Sequence (565 amino acids)

>Atu3212 oligopeptide ABC transporter substrate-binding protein (Agrobacterium fabrum C58)
MDTAEVAALRSARRGPSGKARLALISGVKFMSPVQLSRRSLLKTSLALAATTGLAGIAAA
QEKSGGRLIVAADSEPKNLNPAIVASNGVFYIASKIVEPLAEASFNGKGGLEPRLATEWQ
GSDDGLSATFKLREGVTWHDGKPFTSADVAFSALSVWKPLQNLGRLVFANLEKVETPNDH
TAVFHFSKPTPFQLIRNALPVVTSVVPKHLYEGTDIATNPANTKPVGTGPFVFAEYKPGE
YYRLTRNPNYWAKNQPQLDEIIYRVLPDRAGAASALEAEEIQLAAFSAVPLADLARIAKQ
PGIKVIADGYEALTYQLVVEINHRRKELADLKVRKAIAHAIDKKFVIDKVFLGYATASTG
PVPKNAPEFYTDDVETYDFDVAKANALLDEAGYARGPDGTRFALKLLPAPYFNETKQFGS
YLRQALQEIGIDAELVNNDAAAHQKAVYTDHAFDLAIAPPVFRGDPAISTTILVRSGIPA
GVGFSNQGGYENKTLDTLIDKAAETVHAAARTALYKDFQKQVAADLPLINVAEWGFITVA
RDTVKHVASNPRWAVSNWADTAVDS