Protein Info for Atu3200 in Agrobacterium fabrum C58

Annotation: ribose ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 507 PF00005: ABC_tran" amino acids 28 to 177 (150 residues), 103.6 bits, see alignment E=1.3e-33 amino acids 278 to 430 (153 residues), 59.2 bits, see alignment E=6.9e-20

Best Hits

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 100% identity to atu:Atu3200)

Predicted SEED Role

"D-xylose transport ATP-binding protein XylG" in subsystem Xylose utilization

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEU7 at UniProt or InterPro

Protein Sequence (507 amino acids)

>Atu3200 ribose ABC transporter ATPase (Agrobacterium fabrum C58)
MAFADESPDPGLIRTVGLSKSFGPVQVLKDIEIVVRAGEVHAIIGENGAGKSTLMKLLAG
NEKPSGGEIRIDGEAVALSGPVDAEHRGIVLVHQEILLAPDLTVAQNIYLGRELRRGPMM
DDRAMRAGARKAIADLGGTIDPDAIVGSLSIAQRQLVQIARVLLVPHRVVIFDEPTASLT
PIETDALLNVIRDIRAKGVAVLYISHRLPEVKEIADRVTVLRDGRLVASHTASELQPADM
ARLMVGRDVAKLYPDRHAGGEREPVLQVEHFTVPGYAQDAGFSLRKGEILGFAGLVGAGR
TELMEGVLGLRAGRGNVRHLGRQVHFAKAEDSLKAGIVYLSEDRKGKGLLLTKDLRVNLT
LASLNKFSRLFQIDIRREAQALDDAVRDFDIRTGRKDLLAGQLSGGNQQKLLLAKMMLLD
PSIVIIDEPTRGIDIGTKEQIYRFIASLADEGRSIIVVSSEMPELIGICDRILVMRSGRI
VGEVAGEQMTENDIVALATGVHTQEFA