Protein Info for Atu3188 in Agrobacterium fabrum C58

Annotation: glycerol-3-phosphate transporter ATP-binding subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 PF00005: ABC_tran" amino acids 21 to 162 (142 residues), 117.5 bits, see alignment E=7.2e-38 PF08402: TOBE_2" amino acids 271 to 346 (76 residues), 42.1 bits, see alignment E=7.7e-15

Best Hits

Swiss-Prot: 100% identical to UGPC3_AGRFC: sn-glycerol-3-phosphate import ATP-binding protein UgpC 3 (ugpC3) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K05816, sn-glycerol 3-phosphate transport system ATP-binding protein [EC: 3.6.3.20] (inferred from 100% identity to atu:Atu3188)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.20

Use Curated BLAST to search for 3.6.3.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UB29 at UniProt or InterPro

Protein Sequence (353 amino acids)

>Atu3188 glycerol-3-phosphate transporter ATP-binding subunit (Agrobacterium fabrum C58)
MAKIALKDVRKVYGGNVEAIKSVSMEIADGEMIVLVGPSGCGKSTLLRMIAGLEGISGGQ
IMIGDRVVNDLEPSDRDIAMVFQNYALYPHMTVRQNLAYGLKNRNTPKEEIERRITEAAK
ALEIEQFLERKPRQLSGGQRQRVAMGRAIVRKPAAFLFDEPLSNLDAKLRVQMRVEIRRL
QRSLATTSVYVTHDQMEAMTLADRLVVLNAGRIEQMGTPIELYEKPATTFVATFIGSPSM
NLLAHGAASSNVSAGWSVNAAAALPPTVATLGIRPEDITLAEAEPADAAFAGTVQVDAVE
LVGAESYVHGSFPDGTTIVFRVPGRSQLRIGEMLKIAAQAKDFHLFDAAGKRI