Protein Info for Atu3156 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 50 to 68 (19 residues), see Phobius details amino acids 134 to 159 (26 residues), see Phobius details amino acids 165 to 191 (27 residues), see Phobius details amino acids 207 to 233 (27 residues), see Phobius details amino acids 239 to 258 (20 residues), see Phobius details amino acids 270 to 293 (24 residues), see Phobius details amino acids 313 to 342 (30 residues), see Phobius details amino acids 354 to 382 (29 residues), see Phobius details amino acids 396 to 420 (25 residues), see Phobius details PF06808: DctM" amino acids 6 to 413 (408 residues), 354.3 bits, see alignment E=4.3e-110 TIGR00786: TRAP transporter, DctM subunit" amino acids 16 to 415 (400 residues), 373.8 bits, see alignment E=4.8e-116

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3156)

Predicted SEED Role

"TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CER9 at UniProt or InterPro

Protein Sequence (426 amino acids)

>Atu3156 ABC transporter permease (Agrobacterium fabrum C58)
MSVFLLIAFFGLSMLGVPLAIALALASVGTLWLFTSMPMDLLSQTMFSSMNSFLLVAVPL
FILVGTVMERGRVAERIFDFAEAMVGWLPGGLGHVNVISSVIFSGVSGSSVADIASVGAI
EIKAMERHGFPKGYAVGMTLCTSTLSSIIPPSILIVIAGSIANVSIGTLLIAGLVPGLFI
ALAFLVFNHFYSVHYGYNPPTPFNFRLVVVTGLRAILPMLTPLILIIGIASGLFTPTEAA
AIAVVYVAVLGVIVYRTLPVRELPEILISTARISGTILFIAATSQLAAWVFTFDGLPEQV
AELLKAMNLGPMTGMLVIFVFLLIIGIFMEAIPAMFILIPVLMPPVEALGIDPIHFLIVT
VMTLTLGLVTPPVGVCLFAAAQVANMKIEDVIRGSLAPMTVLTLAIFALVLFPILTLGPI
RLMGLY