Protein Info for Atu3115 in Agrobacterium fabrum C58

Annotation: TetR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 PF00440: TetR_N" amino acids 39 to 85 (47 residues), 49.3 bits, see alignment 3.5e-17 PF17938: TetR_C_29" amino acids 107 to 224 (118 residues), 144.7 bits, see alignment E=1.5e-46

Best Hits

Swiss-Prot: 38% identical to NICS_PSEPK: HTH-type transcriptional repressor NicS (nicS) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K09017, TetR/AcrR family transcriptional regulator (inferred from 100% identity to atu:Atu3115)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEP7 at UniProt or InterPro

Protein Sequence (232 amino acids)

>Atu3115 TetR family transcriptional regulator (Agrobacterium fabrum C58)
MEKTTKNQPLDAAPEETLPPKRKRATTQVRNPERTRAAILEAARREVAAKGLAGARIDVV
ARRAGTNKRMIYHYFGDKDALYLAVLEDAYRHIRHTERRLDLTRKPPAEGLRELALFTWH
YFLDHPEFLSILATENLNKARYLRQSPTIAAMHSNFISELEDVLRRGSDAGEFRDGLDPI
DVYLTIASLGAFYLSNRFTLSTIFQRDLTDPAELERWGQHIVSTLLAAVRPV